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DeepCount: In-Field Automatic Quantification of Wheat Spikes Using Simple Linear Iterative Clustering and Deep
Pouria Sadeghi-Tehran1, Nicolas Virlet1, Eva M Ampe2
1Plant Sciences Department, Rothamsted Research, Harpenden, United Kingdom.
Frontiers in Plant Science
|October 17, 2019
Summary
DeepCount automatically counts wheat spikes using deep learning, improving crop yield analysis. This efficient system reduces labor and enhances high-throughput phenotyping for breeders and farmers.
Area of Science:
- Agricultural Science
- Computer Science
- Plant Breeding
Background:
- Accurate crop yield assessment is crucial for agricultural research and breeding.
- Manual wheat ear counting is labor-intensive, time-consuming, and costly.
- Automated systems are needed for efficient and high-throughput crop analysis.
Purpose of the Study:
- To develop a computationally efficient system, DeepCount, for automatic wheat spike counting in field images.
- To leverage deep learning for robust wheat ear quantification under diverse conditions.
- To provide a foundation for portable, smartphone-assisted, and UAV-based crop monitoring systems.
Main Methods:
- Image segmentation using Simple Linear Iterative Clustering (SLIC) to derive superpixels.
- Feature extraction and model construction for deep convolutional neural network (CNN) classification.
- Semantic segmentation of wheat spikes using a deep learning approach.
Main Results:
- DeepCount demonstrates high robustness across different growth stages, environmental conditions, and canopy complexities.
- The system achieves accurate wheat ear quantification validated against ground-based measurements.
- Performance is superior to traditional edge detection and morphological analysis methods.
Conclusions:
- DeepCount offers a feasible and robust solution for automated wheat spike counting in real-world agricultural settings.
- The system significantly reduces manual labor and supports high-throughput phenotyping.
- Potential for adaptation to RGB images from unmanned aerial vehicles (UAVs) for broader applications.

