Antibiotic-resistant Salmonella in swine wastes and farm surface waters

Hog production takes place mostly in large concentrated animal feeding operations (CAFOs) where waste is managed by storing in lagoons prior to land application of lagoon liquid. Salmonella, including antibiotic-resistant Salmonella, have been found in the farm environment and lagoons. The objective of this research was to determine whether Salmonella resistant to clinically relevant antibiotics were present in wastewaters and surface waters from hog CAFOs. Samples of hog waste and on farm environmental waters were analysed for Salmonella, which were tested for antimicrobial susceptibility. The highest percentage of resistant isolates were found in raw waste flushed from hog houses and in lagoon wastewater; few resistant isolates were found in on-farm surface water. Resistance to sulphamethoxazole was most common, mostly in waste samples and less commonly in surface water, followed by chloramphenicol and ampicillin. No resistance to cephalosporin or fluoroquinolones was found. Resistance to clinically relevant antibiotics was commonly found in Salmonella from hog waste but was less extensive in farm surface waters. Management of wastes from hog CAFOs should be designed to further reduce the risk of human exposures resulting from environmental contamination with Salmonella. SIGNIFICANCE AND IMPACT OF THE STUDY: This study suggests antibiotic-resistant Salmonella were common in hog wastes and present in environmental waters associated with hog CAFOs. Low levels of antibiotic-resistant Salmonella in on-farm stream waters suggest surface waters could have been contaminated, potentially serving as a mechanism of off-farm transport. Since the study, there have been multiple economic, regulatory and practice changes at the federal, state and industry level. These include regulation of antibiotic use and animal waste treatment, vertical integration in the industry and changes in antibiotic use practice. This study is a useful historical baseline against which current antibiotic resistance trends can be measured.