Type II DNA Topoisomerases Cause Spontaneous Double-Strand Breaks in Genomic DNA

Suguru Morimoto1, Masataka Tsuda2, Heeyoun Bunch3

  • 1Department of Radiation Genetics, Graduate School of Medicine, Kyoto University, Yoshida Konoe, Sakyo-ku, Kyoto 606-8501, Japan. morimoto.suguru.68c@kyoto-u.jp.

Genes
|November 2, 2019
PubMed

Insights

Type II DNA topoisomerase (TOP2) enzymes can cause DNA double-strand breaks (DSBs) through abortive catalysis during normal cell cycles and in response to sex hormones. These TOP2-mediated DSBs are efficiently repaired by cellular mechanisms involving BRCA1, BRCA2, and TDP2.

Area of Science:

  • Molecular Biology
  • Genetics
  • Biochemistry

Background:

  • Type II DNA topoisomerase (TOP2) enzymes resolve DNA topological challenges through transient double-strand breaks and re-ligation.
  • TOP2 poisons, like etoposide, stabilize TOP2-DNA cleavage complexes (TOP2ccs), leading to DNA damage.
  • Spontaneously arising and hormone-induced DNA double-strand breaks (DSBs) mediated by TOP2 were previously underestimated.

Purpose of the Study:

  • To review the mechanisms of spontaneously arising DNA double-strand breaks (DSBs) caused by abortive TOP2 catalysis.
  • To summarize the protein machinery involved in repairing stalled TOP2-DNA cleavage complexes (TOP2ccs).
  • To discuss the genotoxicity of androgens and estrogens mediated by TOP2.

Main Methods:

  • Literature review of studies on TOP2 function, DNA repair, and hormone genotoxicity.
  • Analysis of mechanisms underlying TOP2-mediated DNA double-strand break formation and repair.
  • Synthesis of current understanding of TOP2ccs, abortive catalysis, and associated repair pathways.

Main Results:

  • Abortive catalysis by TOP2, particularly when inhibited by poisons or during normal cell cycling, generates significant DNA double-strand breaks (DSBs).
  • TOP2-mediated DSBs are also induced by physiological levels of androgens and estrogens.
  • Efficient repair of these DSBs involves nonhomologous end joining (NHEJ) factors, BRCA1, BRCA2, MRE11 nuclease, and tyrosyl-DNA phosphodiesterase 2 (TDP2).

Conclusions:

  • TOP2-mediated DNA double-strand breaks (DSBs) are a common occurrence, arising from both normal cellular processes and hormonal stimulation.
  • The cellular repair of TOP2-mediated DSBs is a complex process involving multiple proteins, highlighting the importance of these pathways.
  • Understanding TOP2 genotoxicity and repair is crucial for comprehending genome stability and the effects of hormonal agents.

Related Concept Videos

DNA Topoisomerases02:02

DNA Topoisomerases

Topoisomerases are enzymes that relax overwound DNA molecules during various cell processes, including DNA replication and transcription. These enzymes regulate positive and negative DNA supercoiling without changing the nucleotide sequence. DNA overwinding in a clockwise direction results in positively supercoiled DNA, whereas underwinding in a counterclockwise direction produces negatively supercoiled DNA.
Types and Mechanism of action
Topoisomerases are divided into two main types. ...
34.5K
Fixing Double-strand Breaks02:04

Fixing Double-strand Breaks

The double-stranded structure of DNA has two major advantages. First, it serves as a safe repository of genetic information where one strand serves as the back-up in case the other strand is damaged. Second, the double-helical structure can be wrapped around proteins called histones to form nucleosomes, which can then be tightly wound to form chromosomes. This way, DNA chains up to 2 inches long can be contained within microscopic structures in a cell. A double-stranded break not only damages...
14.2K
Fixing Double-strand Breaks02:04

Fixing Double-strand Breaks

4.2K
Spontaneous and Induced Mutations01:30

Spontaneous and Induced Mutations

Spontaneous mutations arise infrequently during DNA replication due to errors in the process. A key factor behind these errors is tautomeric shifts in nitrogenous bases, where bases transition from keto to enol forms or amino to imino forms. This shift can alter base-pairing rules, leading to mutations. Additionally, reactive oxygen species (ROS) arising from aerobic metabolism can damage DNA, resulting in depurination (loss of a purine base) or depyrimidination (loss of a pyrimidine base).
2.0K
Homologous Recombination02:31

Homologous Recombination

The basic reaction of homologous recombination (HR) involves two chromatids that contain DNA sequences sharing a significant stretch of identity. One of these sequences uses a strand from another as a template to synthesize DNA in an enzyme-catalyzed reaction. The final product is a novel amalgamation of the two substrates. To ensure an accurate recombination of sequences, HR is restricted to the S and G2 phases of the cell cycle. At these stages, the DNA has been replicated already and the...
62.2K
Translesion DNA Polymerases02:10

Translesion DNA Polymerases

Translesion (TLS) polymerases rescue stalled DNA polymerases at sites of damaged bases by replacing the replicative polymerase and installing a nucleotide across the damaged site. Doing so, TLS allows additional time for the cell to repair the damage before resuming regular DNA replication.
TLS polymerases are found in all three domains of life - archaea, bacteria, and eukaryotes. Of the different classes of TLS polymerases, members of the Y family are fitted with specialized structures that...
10.9K