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Updated: Jan 3, 2026

The HoneyComb Paradigm for Research on Collective Human Behavior
Published on: January 19, 2019
On Markov blankets and hierarchical self-organisation
Ensor Rafael Palacios1, Adeel Razi2, Thomas Parr1
1The Wellcome Centre for Human Neuroimaging, University College London, Queen Square, London WC1N 3BG, UK.
Biological self-organization, the spontaneous emergence of structures, can be explained by Markov blankets. Simulations show these blankets self-assemble hierarchically, creating life-like patterns from simple rules.
Area of Science:
- Theoretical biology
- Computational neuroscience
- Systems biology
Background:
- Biological systems exhibit self-organization, forming complex structures across scales.
- Markov blankets define boundaries between internal and external states, crucial for system integrity.
- Understanding self-organization is key to explaining life's emergent properties.
Purpose of the Study:
- To investigate if Markov blankets can self-assemble hierarchically in biological systems.
- To model the emergence of self-organizing structures using computational simulations.
- To provide a theoretical framework for autopoiesis and self-evidencing behavior.
Main Methods:
- Simulations based on variational free energy minimization.
- Modeling ensembles of microscopic elements with prior beliefs about macroscopic Markov blankets.
- Analyzing emergent structures under short-range signaling conditions.
Main Results:
- Hierarchical self-organization of Markov blankets was demonstrated through simulations.
- Emergent structures closely resemble natural biological formations like cells and organelles.
- The model shows that collective beliefs drive the self-assembly of organizational levels.
Conclusions:
- Markov blankets can self-assemble into hierarchical structures, mirroring biological organization.
- This framework offers a potential explanation for self-evidencing and autopoietic behavior in life.
- The findings support a computational approach to understanding fundamental biological processes.
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