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Micron-scale Resolution Optical Tomography of Entire Mouse Brains with Confocal Light Sheet Microscopy
Published on: October 8, 2013
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Computed optical coherence microscopy of mouse brain ex vivo
Meiqi Wu1, David M Small1, Nozomi Nishimura1
1Cornell University, Meinig School of Biomedical Engineering, Ithaca, New York, United States.
Journal of Biomedical Optics
|November 28, 2019
Summary
Computational adaptive optics (CAO) enhances optical coherence microscopy (OCM) for volumetric mouse brain imaging. This method significantly reduces data acquisition, achieving high resolution over a large depth range.
Area of Science:
- Biomedical Optics
- Neuroimaging
- Microscopy
Background:
- Optical coherence tomography (OCT) faces a trade-off between lateral resolution and imaging depth.
- Existing optical coherence microscopy (OCM) techniques struggle with large data sizes, long acquisition times, or suboptimal point spread functions.
- Achieving volumetric imaging with extended depth coverage remains a challenge in OCM.
Purpose of the Study:
- To develop a volumetric OCM method with extended depth coverage for ex vivo mouse brain imaging.
- To leverage computational adaptive optics (CAO) to reduce the number of required OCM acquisitions.
- To improve the efficiency of volumetric OCM without compromising resolution.
Main Methods:
- Utilized a spectral-domain OCM system combined with computational adaptive optics (CAO).
- Focused a Gaussian beam at different depths and employed CAO to reduce the number of OCM volumes needed.
- Acquired only 11 OCM data volumes for comprehensive volumetric reconstruction.
Main Results:
- Achieved volumetric reconstruction of ex vivo mouse brain with a lateral resolution of 2.2 μm and axial resolution of 4.7 μm.
- Demonstrated a large imaging depth range of approximately 1.2 mm optical path length.
- Required 4 times fewer datasets compared to traditional focus scanning methods.
Conclusions:
- CAO-OCM enables efficient volumetric imaging of brain tissue microstructures with high resolution and large depth coverage.
- The method significantly reduces data acquisition requirements for volumetric OCM.
- Limitations of CAO were noted in highly scattering media and for deep imaging or reconstructions far from the focal plane.

