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Activation and Measurement of NLRP3 Inflammasome Activity Using IL-1β in Human Monocyte-derived Dendritic Cells
Published on: May 22, 2014
A Mitochondrial Micropeptide Is Required for Activation of the Nlrp3 Inflammasome
Ankit Bhatta1, Maninjay Atianand2, Zhaozhao Jiang1
1Program in Innate Immunity, Department of Medicine, University of Massachusetts Medical School, Worcester, MA 01605; and.
Abstract:
Functional peptides encoded by short open reading frames are emerging as important mediators of fundamental biological processes. In this study, we identified a micropeptide produced from a putative long noncoding RNA (lncRNAs) that is important in controlling innate immunity. By studying lncRNAs in mice macrophages, we identified lncRNA 1810058I24Rik, which was downregulated in both human and murine myeloid cells exposed to LPS as well as other TLR ligands and inflammatory cytokines. Analysis of lncRNA 1810058I24Rik subcellular localization revealed that this transcript was localized in the cytosol, prompting us to evaluate its coding potential. In vitro translation with 35S-labeled methionine resulted in translation of a 47 aa micropeptide. Microscopy and subcellular fractionation studies in macrophages demonstrated endogenous expression of this peptide on the mitochondrion. We thus named this gene mitochondrial micropeptide-47 (Mm47). Crispr-Cas9-mediated deletion of Mm47, as well as small interfering RNA studies in mice primary macrophages, showed that the transcriptional response downstream of TLR4 was intact in cells lacking Mm47. In contrast, Mm47-deficient or knockdown cells were compromised for Nlrp3 inflammasome responses. Activation of Nlrc4 or Aim2 inflammasomes were intact in cells lacking Mm47. This study therefore identifies, to our knowledge, a novel mitochondrial micropeptide Mm47 that is required for the activation of the Nlrp3 inflammasome. This work further highlights the functional activity of short open reading frame-encoded peptides and underscores their importance in innate immunity.
Insights
Researchers discovered a new mitochondrial micropeptide, Mm47, crucial for Nlrp3 inflammasome activation in innate immunity. This peptide, encoded by a long noncoding RNA, plays a key role in immune responses.
Area of Science:
- Immunology
- Molecular Biology
- Genetics
Background:
- Short open reading frame (sORF)-encoded peptides are increasingly recognized for their roles in biological processes.
- Long noncoding RNAs (lncRNAs) are being explored for their potential to encode functional peptides.
- Innate immunity relies on complex signaling pathways, including inflammasomes, to detect and respond to pathogens.
Purpose of the Study:
- To identify and characterize novel micropeptides involved in innate immunity.
- To investigate the function of a micropeptide derived from lncRNA 1810058I24Rik in macrophages.
- To determine the role of the identified micropeptide in inflammasome activation.
Main Methods:
- Identification of lncRNA 1810058I24Rik in mouse macrophages.
- In vitro translation assays to confirm peptide production.
- Subcellular localization studies using microscopy and fractionation.
- CRISPR-Cas9 gene deletion and small interfering RNA (siRNA) knockdown in primary macrophages.
- Analysis of inflammasome activation (Nlrp3, Nlrc4, Aim2) and TLR4 responses.
Main Results:
- A novel micropeptide, mitochondrial micropeptide-47 (Mm47), was identified and localized to mitochondria.
- Mm47 is translated from lncRNA 1810058I24Rik, which is downregulated by inflammatory stimuli.
- Deletion or knockdown of Mm47 impaired Nlrp3 inflammasome activation but did not affect TLR4, Nlrc4, or Aim2 inflammasome responses.
Conclusions:
- A novel mitochondrial micropeptide, Mm47, is essential for Nlrp3 inflammasome activation.
- This study highlights the functional significance of sORF-encoded peptides in innate immunity.
- Mm47 represents a new target for understanding and potentially modulating immune responses.
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