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Single Nucleotide Polymorphisms-SNPs

Single Nucleotide Polymorphisms-SNPs

A single nucleotide polymorphism or SNP is a single nucleotide variation at a specific genomic position in a large population. It is the most prevalent type of sequence variation found in the human genome. Point mutations that occur in more than 1% of the population qualify as SNPs. These are present once every 1000 nucleotides on an average in the human genome. Replacement of a purine with another purine (A/G) or a pyrimidine with another pyrimidine (C/T) is known as a transition. In contrast,...

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Rice Stress-Resistant SNP Database.

Samuel Tareke Woldegiorgis¹, Shaobo Wang¹, Yiruo He²

¹College of Life Sciences, Fujian Agriculture and Forestry University, Fuzhou, 350002, China.

Rice (New York, N.Y.)

|December 25, 2019

Summary

This summary is machine-generated.

A new Rice Stress-Resistant SNP database (RSRS) integrates over 9.5 million SNPs and 797 candidate genes from 400+ rice varieties. This resource aids scientists in understanding stress resistance in rice.

Keywords:

Abiotic stress Biotic stress Database SNP

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Area of Science:

Genomics
Plant Science
Bioinformatics

Background:

Rice yield is significantly impacted by biotic and abiotic environmental stresses.
Identifying genes associated with stress resistance is crucial for improving rice cultivation.
Existing SNP databases lack integrated stress-resistant variation and phenotype data.

Purpose of the Study:

To develop a comprehensive web resource for rice stress-resistant variations.
To integrate Single Nucleotide Polymorphism (SNP) data with functional and phenotype information.
To facilitate research on genes related to environmental stress tolerance in rice.

Main Methods:

Curated and integrated over 9.5 million stress-resistant SNPs.
Identified 797 stress-resistant candidate genes in rice.
Developed a user-friendly web interface for data querying, browsing, and visualization.

Main Results:

The Rice Stress-Resistant SNP (RSRS) database (http://bioinformatics.fafu.edu.cn/RSRS) is now available.
The database includes SNPs from over 400 stress-resistant rice varieties.
Features include SNP function, genome annotation, phenotype data, and alignment capabilities.

Conclusions:

The RSRS database provides a valuable tool for researchers studying rice stress resistance.
Facilitates characterization of variants linked to environmental stress tolerance.
Supports advancements in developing stress-resilient rice varieties.