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Updated: Jan 1, 2026

Integration of Wet and Dry Bench Processes Optimizes Targeted Next-generation Sequencing of Low-quality and Low-quantity Tumor Biopsies
Published on: April 11, 2016
Immunotherapy and next-generation sequencing guided therapy for precision oncology: What have we learnt and what does
Roman Groisberg1, Vivek Subbiah1
1Department of Investigational Cancer Therapeutics (Phase 1 Program), Division of Cancer Medicine, The University of Texas MD Anderson Cancer Center, Houston, Texas.
Introduction:
The rapid development of clinical next generation sequencing (NGS) and the contemporaneous availability of molecular targeted therapies ignited and fueled the field of precision oncology. More recently there has been an explosion of immunotherapeutic agents, specifically the checkpoint inhibitors: PD-1, PD-L1 and CTLA-4 antibodies. These new classes of agents have produced durable responses in a variety of tumor subtypes.
Areas Covered:
In this review, the authors explore the role of NGS in identifying targets for molecular therapy. The authors also expand on the future uses of NGS in oncology including: prediction of checkpoint inhibitor response, quantification of tumor mutational burden, neoantigen calling using bioinformatics tools, and finally the personalization of cell transfer technologies and cancer vaccines.
Expert Commentary:
The near future will witness an increased understanding of the immune system and genomics in cancer. High throughput sequencing technology will expand in parallel with an ever-expanding array of novel therapies. Improved computational power coupled with bioinformatics algorithms will combine the fields of genomics and immunology. The emerging fields that stand to benefit from rapid translation of NGS technology include cancer vaccines and adoptive cell therapy, which will further refine precision oncology.
Insights
Next-generation sequencing (NGS) is revolutionizing precision oncology by identifying targets for molecular therapies and predicting responses to immunotherapies like checkpoint inhibitors. Future applications include personalized cancer vaccines and cell therapies, enhancing cancer treatment strategies.
Area of Science:
- Oncology
- Genomics
- Immunology
Background:
- Clinical next-generation sequencing (NGS) and targeted therapies have advanced precision oncology.
- Immunotherapeutic agents, including PD-1, PD-L1, and CTLA-4 inhibitors, are yielding durable responses across tumor types.
Purpose of the Study:
- To review the role of NGS in identifying molecular therapy targets.
- To explore future applications of NGS in oncology, such as predicting immunotherapy response and personalizing cell therapies.
Main Methods:
- Literature review focusing on NGS applications in oncology.
- Discussion of bioinformatics tools for neoantigen calling and tumor mutational burden quantification.
Main Results:
- NGS is crucial for identifying targets for molecular and immunotherapies.
- Future NGS integration promises enhanced prediction of treatment response and personalized therapeutic strategies.
Conclusions:
- Advancements in NGS, computational power, and bioinformatics will deepen the understanding of cancer genomics and immunology.
- Emerging fields like cancer vaccines and adoptive cell therapy will further refine precision oncology through NGS integration.
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