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Machine Learning and Feature Selection Methods for Disease Classification With Application to Lung Cancer Screening

Darcie A P Delzell1, Sara Magnuson1, Tabitha Peter1

  • 1Department of Mathematics and Computer Science, Wheaton College, Wheaton, IL, United States.

Frontiers in Oncology
|January 11, 2020
PubMed
Summary

Machine learning models using radiomic biomarkers show promise in accurately classifying lung nodules. These methods significantly reduce the high false positive rates seen in traditional lung cancer screening.

Keywords:
CT imagebiomarkerslung cancermachine learningradiomics

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Area of Science:

  • Radiology
  • Machine Learning
  • Oncology

Background:

  • Lung cancer screening has increased awareness of risks and benefits.
  • The National Lung Screening Trial (NLST) demonstrated reduced mortality but had a high false positive rate (>94%).
  • Improving the accuracy and reducing false positives in lung nodule classification is crucial.

Purpose of the Study:

  • To evaluate machine learning classifiers for predicting lung nodule malignancy.
  • To assess the ability of these models to reduce the false positive rate.
  • To identify optimal classifiers and feature selection methods for lung nodule classification.

Main Methods:

  • Utilized 416 quantitative imaging biomarkers from CT scans of 200 patients with verified cancerous or benign lung nodules.
  • Employed various linear, nonlinear, and ensemble machine learning models.
  • Applied feature selection methods, including linear combination and correlation, to classify nodule status.

Main Results:

  • Elastic net and support vector machine models, with specific feature selection, achieved the highest performance (average cross-validation AUC near 0.72).
  • Random forest and bagged trees performed less effectively (AUC near 0.60).
  • The best-performing models achieved a false positive rate of approximately 30%, a significant reduction compared to the NLST.

Conclusions:

  • Radiomic biomarkers combined with machine learning offer a promising approach for lung nodule classification.
  • These methods demonstrate potential for accurate tumor classification while substantially lowering false positive rates.
  • This technology could enhance diagnostic accuracy and improve patient outcomes in lung cancer screening.