The tumor suppressor PTPRK promotes ZNRF3 internalization and is required for Wnt inhibition in the Spemann organizer
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Updated: Dec 31, 2025

The Soft Agar Colony Formation Assay
Published on: October 27, 2014
Ling-Shih Chang1, Minseong Kim1, Andrey Glinka1
1Division of Molecular Embryology, DKFZ-ZMBH Alliance, Deutsches Krebsforschungszentrum (DKFZ), Heidelberg, Germany.
Abstract:
A hallmark of Spemann organizer function is its expression of Wnt antagonists that regulate axial embryonic patterning. Here we identify the tumor suppressor Protein tyrosine phosphatase receptor-type kappa (PTPRK), as a Wnt inhibitor in human cancer cells and in the Spemann organizer of Xenopus embryos. We show that PTPRK acts via the transmembrane E3 ubiquitin ligase ZNRF3, a negative regulator of Wnt signaling promoting Wnt receptor degradation, which is also expressed in the organizer. Deficiency of Xenopus Ptprk increases Wnt signaling, leading to reduced expression of Spemann organizer effector genes and inducing head and axial defects. We identify a '4Y' endocytic signal in ZNRF3, which PTPRK maintains unphosphorylated to promote Wnt receptor depletion. Our discovery of PTPRK as a negative regulator of Wnt receptor turnover provides a rationale for its tumor suppressive function and reveals that in PTPRK-RSPO3 recurrent cancer fusions both fusion partners, in fact, encode ZNRF3 regulators.
Insights
Protein tyrosine phosphatase receptor-type kappa (PTPRK) acts as a Wnt inhibitor in human cancers and embryonic development. It regulates Wnt signaling by controlling receptor degradation, impacting axial patterning and tumor suppression.
Area of Science:
- Developmental Biology
- Cancer Biology
- Molecular Cell Biology
Background:
- The Spemann organizer is crucial for embryonic axial patterning and expresses Wnt antagonists.
- Wnt signaling pathways are vital in both embryonic development and cancer progression.
Purpose of the Study:
- To identify novel Wnt antagonists involved in Spemann organizer function.
- To elucidate the role of Protein tyrosine phosphatase receptor-type kappa (PTPRK) in Wnt signaling and embryonic patterning.
- To understand the mechanism by which PTPRK regulates Wnt signaling and its implications in cancer.
Main Methods:
- Expression analysis of PTPRK and ZNRF3 in Xenopus embryos and human cancer cells.
- Functional studies involving knockdown or deficiency of PTPRK in Xenopus embryos.
- Biochemical assays to investigate the interaction between PTPRK, ZNRF3, and Wnt receptors.
- Analysis of PTPRK-RSPO3 cancer fusions.
Main Results:
- PTPRK identified as a Wnt inhibitor in human cancer cells and the Xenopus Spemann organizer.
- PTPRK regulates Wnt signaling by interacting with ZNRF3, promoting Wnt receptor degradation.
- Loss of PTPRK in Xenopus embryos leads to increased Wnt signaling, affecting gene expression and causing developmental defects.
- PTPRK maintains ZNRF3 in an unphosphorylated state, facilitating Wnt receptor depletion via a '4Y' endocytic signal.
Conclusions:
- PTPRK is a key regulator of Wnt signaling through modulation of Wnt receptor turnover.
- PTPRK's role as a negative regulator of Wnt signaling provides a mechanistic basis for its tumor suppressive function.
- Recurrent PTPRK-RSPO3 cancer fusions involve regulators of ZNRF3, highlighting the importance of this pathway in cancer.
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