Split the Charge Difference in Two! A Rule of Thumb for Adding Proper Amounts of Ions in MD Simulations
Matías R Machado1, Sergio Pantano1
1Biomolecular Simulations Group, Institut Pasteur de Montevideo, Mataojo 2020, Montevideo CP 11400, Uruguay.
Abstract:
Despite the relevance of properly setting ionic concentrations in Molecular Dynamics (MD) simulations, methods or practical rules to set ionic strength are scarce and rarely documented. Based on a recently proposed thermodynamics method we provide an accurate rule of thumb to define the electrolytic content in simulation boxes. Extending the use of good practices in setting up MD systems is promptly needed to ensure reproducibility and consistency in molecular simulations.
More Related Videos
05:37Rapid in-silico Battery Electrolyte Electrochemical Reaction Generation using 3T-VASP Multi-Scale Energy Minimization
Published on: August 22, 2025
07:31Author Spotlight: Advancing Cell Membrane Biophysics - Exploring Interactions and Challenges Through Experimental and Computational Approaches
Published on: September 1, 2023
Related Concept Videos
Lewis Structures of Molecular Compounds and Polyatomic Ions
Polyprotic Acids
Electrolytes: van't Hoff Factor
The colligative properties of a solution depend only on the number, not on the identity, of solute species dissolved. The concentration terms in the equations for various colligative properties (freezing point depression, boiling point elevation, osmotic pressure) pertain to all solute species present in the solution. Nonelectrolytes dissolve physically without dissociation or any other accompanying process. Each molecule that dissolves yields one...
Formal Charges
Ionic Bonding and Electron Transfer
Formation of Complex Ions
