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Published on: May 12, 2023
Cationic guanine: positively charged nucleobase with improved DNA affinity inhibits self-duplex formation
Masaki Hibino1, Yuichiro Aiba1, Osami Shoji1
1Department of Chemistry, Graduate School of Science, Nagoya University, Furo-cho, Chikusa-ku, Nagoya, Aichi 464-8601, Japan. aiba.yuichiro@i.mbox.nagoya-u.ac.jp shoji.osami@a.mbox.nagoya-u.ac.jp.
Abstract:
Oligonucleotides represent powerful DNA-recognition tools, but the formation of undesirable "self-duplexes" becomes more probable with increasing DNA affinity. Herein, we have developed a modified nucleobase with "self-avoiding" properties. Facile methylation of guanine yields a cationic N7-methylguanine, which suppresses the formation of self-duplexes whilst improving DNA affinity through electrostatic interaction.
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