Related Experiment Video
Updated: Dec 28, 2025

Characterizing DNA Repair Processes at Transient and Long-lasting Double-strand DNA Breaks by Immunofluorescence Microscopy
Published on: June 8, 2018
Cooperation of the ATM and Fanconi Anemia/BRCA Pathways in Double-Strand Break End Resection
Mu-Yan Cai1, Connor E Dunn2, Wenxu Chen1
1Department of Radiation Oncology, Dana-Farber Cancer Institute, Boston, MA 02215, USA; Collaborative Innovation Center for Cancer Medicine, State Key Laboratory of Oncology in South China, Sun Yat-sen University Cancer Center, Guangzhou 510060, China.
Abstract:
Cells deficient in ataxia telangiectasia mutated (ATM) are hypersensitive to ionizing radiation and other anti-cancer agents that induce double-strand DNA breaks. ATM inhibitors may therefore sensitize cancer cells to these agents. Some cancers may also have underlying genetic defects predisposing them to an ATM inhibitor monotherapy response. We have conducted a genome-wide CRISPR screen to identify genetic vulnerabilities that sensitize lung cancer cells to ATM inhibitors. Knockout of genes in the Fanconi anemia (FA)/BRCA pathway results in hypersensitivity to the ATM inhibitor M3541. Knockdown of either an FA gene or of ATM results in reduced double-strand break end resection, enhanced non-homologous end joining (NHEJ) repair, and decreased homologous recombination repair. Knockout of both the FA/BRCA pathway and ATM strongly inhibits end resection and generates toxic levels of NHEJ, thereby elucidating a mechanism of cellular death by synthetic lethality. ATM inhibitors may therefore be useful for the treatment of tumors with a defective FA/BRCA pathway.
Insights
Lung cancer cells with defects in the Fanconi anemia/BRCA pathway are sensitive to ATM inhibitors. Combining ATM inhibition with FA/BRCA pathway defects causes synthetic lethality, offering a potential cancer therapy strategy.
Area of Science:
- Genetics
- Cancer Biology
- Molecular Oncology
Background:
- Ataxia telangiectasia mutated (ATM) deficient cells exhibit hypersensitivity to DNA damaging agents.
- ATM inhibitors are being explored to sensitize cancer cells to anti-cancer therapies.
- Identifying genetic vulnerabilities can predict response to ATM inhibitor monotherapy.
Purpose of the Study:
- To identify genetic vulnerabilities sensitizing lung cancer cells to ATM inhibitors using a genome-wide CRISPR screen.
- To elucidate the mechanism of synthetic lethality induced by ATM inhibitors in combination with DNA repair pathway defects.
Main Methods:
- Genome-wide CRISPR screen in lung cancer cells.
- Treatment with ATM inhibitor M3541.
- Assessment of DNA double-strand break repair pathways (homologous recombination and non-homologous end joining).
Main Results:
- Knockout of Fanconi anemia (FA)/BRCA pathway genes conferred hypersensitivity to the ATM inhibitor M3541.
- Combined deficiency in FA/BRCA pathway and ATM led to reduced DNA end resection and enhanced non-homologous end joining (NHEJ).
- This combination resulted in toxic levels of NHEJ, causing synthetic lethality.
Conclusions:
- Defects in the FA/BRCA pathway sensitize cancer cells to ATM inhibitors.
- ATM inhibitors may be effective as monotherapy for tumors with a defective FA/BRCA pathway.
- Synthetic lethality through combined targeting of ATM and FA/BRCA pathway offers a novel therapeutic strategy.
Related Concept Videos
Restarting Stalled Replication Forks
Fixing Double-strand Breaks
Fixing Double-strand Breaks
DNA Damage can Stall the Cell Cycle
DNA Damage Can Stall the Cell Cycle
Homologous Recombination

