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Molecular identification of Fusarium species complex isolated from clinical samples and its antifungal susceptibility
Yashik Bansal1, Nidhi Singla1, Neelam Kaistha1
1Department of Microbiology, Government Medical College Hospital, Chandigarh, India.
Background And Purpose:
More than 300 Fusarium species are grouped into approximately 23 species complexes out of which around 70 are involved in human infections. The nomenclature of these species has undergone considerable changes in recent years. These species cause localized infections in individuals while inducing systemic infections mainly in immunocompromised patients. The present study was conducted to identify Fusarium species in clinical isolates by molecular methods and determine their in vitro minimum inhibitory concentration (MIC) patterns to address the lack of data in this domain in Northern India.
Materials And Methods:
For the purpose of the study, Fusarium isolates obtained from various clinical samples were sent to the Westerdijk Fungal Biodiversity Institute, Utrecht, the Netherlands, for molecular identification. The MIC testing was performed using the microbroth dilution method as per the Clinical and Laboratory Standards Institute reference method (M38-A2).
Results:
Fusarium was isolated from 33 patients (i.e., 1, 1, 2, 14, and 15 cases with endophthalmitis, sinusitis, pulmonary involvement, onychomycosis, and keratitis, respectively). These 33 isolates belonged to three species complexes, namely F. solani species complex (FSSC; n=13), F. fujikuroi species complex (FFSC; n=13), and F. incarnatum equiseti species complex (FIESC; n=7). The species identified within FSSC, FFSC, and FIESC included F. keratoplasticum (n=6)/F. falciforme (n=6)/F. solani (n=1), F. proliferatum (n=7)/F. sacchari (n=5)/F. anthophilum (n=1), and F. incarnatum SC species (n=6)/F. equiseti SC species (n=1), respectively. The MIC results showed that all isolates had a lower MIC against amphotericin B than against the other antifungal agents.
Insights
This study identified Fusarium species in clinical samples from Northern India using molecular methods. All identified Fusarium isolates showed lower minimum inhibitory concentrations (MICs) against amphotericin B compared to other antifungals.
Area of Science:
- Medical Mycology
- Clinical Microbiology
- Fungal Biodiversity
Background:
- Fusarium species are a significant cause of human infections, particularly in immunocompromised individuals.
- Accurate identification of Fusarium species is crucial due to evolving nomenclature and varying clinical relevance.
- There is a lack of data on Fusarium species and their antifungal susceptibility in Northern India.
Purpose of the Study:
- To identify Fusarium species from clinical isolates in Northern India using molecular techniques.
- To determine the in vitro minimum inhibitory concentration (MIC) patterns of these Fusarium isolates against various antifungal agents.
- To address the data gap concerning Fusarium infections in the specified region.
Main Methods:
- Clinical Fusarium isolates were subjected to molecular identification at the Westerdijk Fungal Biodiversity Institute.
- Minimum inhibitory concentrations (MICs) were determined using the microbroth dilution method, following CLSI M38-A2 guidelines.
Main Results:
- Fusarium species were isolated from 33 patients with various infections including keratitis, onychomycosis, and sinusitis.
- The most prevalent species complexes were Fusarium solani species complex (FSSC), Fusarium fujikuroi species complex (FFSC), and Fusarium incarnatum-equiseti species complex (FIESC).
- All Fusarium isolates exhibited lower MICs for amphotericin B compared to other tested antifungal drugs.
Conclusions:
- Molecular identification revealed a diverse range of Fusarium species causing infections in Northern India.
- Amphotericin B demonstrated the most potent in vitro activity against the clinical Fusarium isolates studied.
- These findings highlight the importance of accurate Fusarium species identification and provide guidance for antifungal therapy in the region.
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