Cooperation and interplay between base and nucleotide excision repair pathways: From DNA lesions to proteins

Namrata Kumar1,2, Natália C Moreno3, Bruno C Feltes4

  • 1University of Pittsburgh, School of Medicine, Department of Microbiology and Molecular Genetics, Pittsburgh, PA, USA.

Insights

Base and nucleotide excision repair pathways cooperate to fix DNA damage. Oxidative stress impairs these repair systems, increasing risks of cancer and aging.

Area of Science:

  • Molecular Biology
  • Genetics
  • Biochemistry

Background:

  • Base excision repair (BER) and nucleotide excision repair (NER) traditionally handle distinct DNA damage types.
  • BER targets small base modifications (e.g., oxidation), while NER addresses bulky lesions (e.g., UV, chemical carcinogens).
  • Emerging evidence reveals significant crosstalk and protein exchange between BER and NER pathways.

Purpose of the Study:

  • To review the complex interplay between BER and NER pathways.
  • To highlight the involvement of NER in oxidative DNA damage repair.
  • To discuss BER's role in removing bulky DNA adducts.

Main Methods:

  • Literature review of studies on BER and NER pathway interactions.
  • Analysis of experimental data, including UVA light-induced protein oxidation.
  • Presentation of a protein interactome for BER and NER.

Main Results:

  • NER participates in repairing oxidative DNA damage.
  • BER is involved in removing bulky DNA adducts.
  • Oxidative stress, exacerbated by UVA light, oxidizes BER and NER proteins, impairing DNA repair capacity.
  • Protein oxidation in BER and NER components leads to mutagenesis, cell death, cancer, and aging.

Conclusions:

  • BER and NER pathways exhibit complex cooperation beyond their canonical roles.
  • Oxidative stress poses a significant threat by compromising both pathways.
  • The identified protein interactome underscores the interconnectedness of BER and NER, suggesting shared functions crucial for genome stability.

Related Concept Videos

Nucleotide Excision Repair01:38

Nucleotide Excision Repair

DNA Distortion and Damage
Cells are regularly exposed to mutagens—factors in the environment that can damage DNA and generate mutations. UV radiation is one of the most common mutagens and is estimated to introduce a significant number of changes in DNA. These include bends or kinks in the structure, which can block DNA replication or transcription. If these errors are not fixed, the damage can cause mutations, which in turn can result in cancer or disease depending on which sequences are...
4.8K
Nucleotide Excision Repair01:08

Nucleotide Excision Repair

Overview
40.4K
Base Excision Repair01:54

Base Excision Repair

One of the common DNA damages is the chemical alteration of single bases by alkylation, oxidation, or deamination. The altered bases cause mispairing and strand breakage during replication. This type of damage causes minimal change to the DNA double helix structure and can be repaired by the base excision repair (BER) pathways. BER corrects damaged DNA sequences by removing the damaged base and restoring the original base sequence using the complementary strand as a template.
The first step of...
25.8K
Base Excision Repair01:54

Base Excision Repair

4.9K
Long-patch Base Excision Repair01:02

Long-patch Base Excision Repair

Since the discovery of the two BER pathways, there has been a debate about how a cell chooses one pathway over the other and the factors determining this selection. Numerous in vitro experiments have pointed out multiple determinants for the sub-pathway selection. These are:
7.7K
Base-pairing and DNA Repair02:27

Base-pairing and DNA Repair

89.5K