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Updated: Dec 27, 2025

Visualizing and Quantifying Endonuclease-Based Site-Specific DNA Damage
Published on: August 21, 2021
Cooperation and interplay between base and nucleotide excision repair pathways: From DNA lesions to proteins
Namrata Kumar1,2, Natália C Moreno3, Bruno C Feltes4
1University of Pittsburgh, School of Medicine, Department of Microbiology and Molecular Genetics, Pittsburgh, PA, USA.
Abstract:
Base and nucleotide excision repair (BER and NER) pathways are normally associated with removal of specific types of DNA damage: small base modifications (such as those induced by DNA oxidation) and bulky DNA lesions (such as those induced by ultraviolet or chemical carcinogens), respectively. However, growing evidence indicates that this scenario is much more complex and these pathways exchange proteins and cooperate with each other in the repair of specific lesions. In this review, we highlight studies discussing the involvement of NER in the repair of DNA damage induced by oxidative stress, and BER participating in the removal of bulky adducts on DNA. Adding to this complexity, UVA light experiments revealed that oxidative stress also causes protein oxidation, directly affecting proteins involved in both NER and BER. This reduces the cell's ability to repair DNA damage with deleterious implications to the cells, such as mutagenesis and cell death, and to the organisms, such as cancer and aging. Finally, an interactome of NER and BER proteins is presented, showing the strong connection between these pathways, indicating that further investigation may reveal new functions shared by them, and their cooperation in maintaining genome stability.
Insights
Base and nucleotide excision repair pathways cooperate to fix DNA damage. Oxidative stress impairs these repair systems, increasing risks of cancer and aging.
Area of Science:
- Molecular Biology
- Genetics
- Biochemistry
Background:
- Base excision repair (BER) and nucleotide excision repair (NER) traditionally handle distinct DNA damage types.
- BER targets small base modifications (e.g., oxidation), while NER addresses bulky lesions (e.g., UV, chemical carcinogens).
- Emerging evidence reveals significant crosstalk and protein exchange between BER and NER pathways.
Purpose of the Study:
- To review the complex interplay between BER and NER pathways.
- To highlight the involvement of NER in oxidative DNA damage repair.
- To discuss BER's role in removing bulky DNA adducts.
Main Methods:
- Literature review of studies on BER and NER pathway interactions.
- Analysis of experimental data, including UVA light-induced protein oxidation.
- Presentation of a protein interactome for BER and NER.
Main Results:
- NER participates in repairing oxidative DNA damage.
- BER is involved in removing bulky DNA adducts.
- Oxidative stress, exacerbated by UVA light, oxidizes BER and NER proteins, impairing DNA repair capacity.
- Protein oxidation in BER and NER components leads to mutagenesis, cell death, cancer, and aging.
Conclusions:
- BER and NER pathways exhibit complex cooperation beyond their canonical roles.
- Oxidative stress poses a significant threat by compromising both pathways.
- The identified protein interactome underscores the interconnectedness of BER and NER, suggesting shared functions crucial for genome stability.
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