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Updated: Dec 26, 2025

Genome-Wide Analysis of DNA Methylation in Gastrointestinal Cancer
Published on: September 18, 2020
CpG-methylation-based risk score predicts progression in colorectal cancer
Yao Deng1, Hao Wan1, Jianbo Tian1
1Department of Epidemiology & Biostatistics & Ministry of Education Key Lab of Environment & Health, School of Public Health, Tongji Medical College, Huazhong University of Science & Technology, Wuhan, Hubei 430030, PR China.
A new risk score identifies colorectal cancer (CRC) patients at higher risk of progression. This DNA methylation-based predictor aids in personalized treatment strategies for CRC.
Area of Science:
- Oncology
- Genomics
- Cancer Biomarkers
Background:
- Colorectal cancer (CRC) progression risk stratification is crucial for personalized therapy.
- Identifying patients with higher risk of progression enables tailored treatment strategies.
Purpose of the Study:
- To develop a predictor for progression-free interval (PFI) in colorectal cancer patients.
- To identify patients with a truly higher risk of CRC progression for precision therapy.
Main Methods:
- Utilized The Cancer Genome Atlas (TCGA) CRC methylation data to develop a risk score.
- Associated the risk score with progression-free interval (PFI) in the CRC cohort.
- Generated a nomogram integrating the risk score and clinical features for PFI prediction.
Main Results:
- The developed risk score showed a significant association with PFI (p < 0.001).
- The nomogram predicted 3-year and 5-year PFI with AUCs of 0.79 and 0.71, respectively.
- The risk score was based on 23 DNA methylation sites.
Conclusions:
- A risk score derived from 23 DNA methylation sites can predict CRC progression.
- This risk score may enhance the prediction of progression in clinical practice.
- The findings support individualized approaches to precision therapy for colorectal cancer.
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