Identification of a phosphorylation site on Ulk1 required for genotoxic stress-induced alternative autophagy

Alternative autophagy is an autophagy-related protein 5 (Atg5)-independent type of macroautophagy. Unc51-like kinase 1 (Ulk1) is an essential initiator not only for Atg5-dependent canonical autophagy but also for alternative autophagy. However, the mechanism as to how Ulk1 differentially regulates both types of autophagy has remained unclear. In this study, we identify a phosphorylation site of Ulk1 at Ser⁷⁴⁶, which is phosphorylated during genotoxic stress-induced alternative autophagy. Phospho-Ulk1⁷⁴⁶ localizes exclusively on the Golgi and is required for alternative autophagy, but not canonical autophagy. We also identify receptor-interacting protein kinase 3 (RIPK3) as the kinase responsible for genotoxic stress-induced Ulk1⁷⁴⁶ phosphorylation, because RIPK3 interacts with and phosphorylates Ulk1 at Ser⁷⁴⁶, and loss of RIPK3 abolishes Ulk1⁷⁴⁶ phosphorylation. These findings indicate that RIPK3-dependent Ulk1⁷⁴⁶ phosphorylation on the Golgi plays a pivotal role in genotoxic stress-induced alternative autophagy.