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Applying high-performance computing in drug discovery and molecular simulation.

Tingting Liu1, Dong Lu1, Hao Zhang1

  • 1State Key Laboratory of Drug Research, Shanghai Institute of Materia Medica, Chinese Academy of Sciences, Shanghai 201203, China.

National Science Review
|April 15, 2020
PubMed
Summary
This summary is machine-generated.

High-performance computing (HPC) accelerates drug discovery in China, driving advancements in virtual screening, molecular simulation, and protein folding. Future applications in precision medicine are also explored.

Keywords:
computational drug discovery and designhigh-performance computingmolecular dynamics simulationprotein foldingvirtual screening

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Area of Science:

  • Computational chemistry and biology
  • Pharmacology
  • Bioinformatics

Background:

  • High-performance computing (HPC) and supercomputers have seen significant advancements in China.
  • Computational drug discovery and design, integrating pharmaceutical chemistry and computational biology, is a key area in drug R&D.
  • This field receives substantial financial support from the Chinese government, fostering innovation.

Purpose of the Study:

  • To review the application of HPC in drug discovery and molecular simulation at the Chinese Academy of Sciences.
  • To highlight achievements in virtual drug screening, molecular dynamics simulation, and protein folding.
  • To discuss the future potential of HPC in precision medicine.

Main Methods:

  • Review of computational drug discovery and design methodologies.
  • Analysis of HPC applications in molecular simulation techniques.
  • Examination of software and database developments in the field.

Main Results:

  • Development of novel algorithms, software, and databases for drug design.
  • Successful application of HPC in virtual drug screening and molecular dynamics simulations.
  • Advancements in protein folding studies using computational approaches.

Conclusions:

  • HPC is a critical enabler of modern drug discovery and molecular simulation in China.
  • Significant progress has been made at the Chinese Academy of Sciences in applying HPC to pharmaceutical research.
  • HPC holds considerable promise for future advancements in precision medicine.