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Updated: Dec 22, 2025

Pharmacophore Modeling for Targets with Extensive Ligand Libraries: A Case Study on SARS-CoV-2 Mpro
Published on: September 26, 2025
Insights into the inhibitory potential of selective phytochemicals against Mpro of 2019-nCoV: a computer-aided study
Nouman Rasool1,2, Ammara Akhtar3, Waqar Hussain4,2
1Dr Panjwani Center for Molecular Medicine and Drug Research, International Center for Chemical and Biological Sciences, University of Karachi, Karachi, 75270 Pakistan.
Insights
This study used computational methods to find phytochemical inhibitors for the 2019-nCoV main protease (Mpro). Several plant compounds showed potential as effective treatments against the novel coronavirus.
Area of Science:
- Virology
- Medicinal Chemistry
- Computational Biology
Background:
- The emergence of 2019-nCoV (now known as SARS-CoV-2) in late 2019 led to a global pandemic.
- Severe acute respiratory syndrome associated with 2019-nCoV has caused significant mortality.
- There is an urgent need for effective treatments and antiviral drugs against 2019-nCoV.
Purpose of the Study:
- To identify potential phytochemical inhibitors targeting the main protease (Mpro) of 2019-nCoV.
- To evaluate the binding properties of medicinal plant compounds (ligands) against the viral Mpro.
- To assess the drug-likeness and inhibitory potential of selected phytochemicals.
Main Methods:
- Computational approaches, including molecular docking, were employed.
- Phytochemicals were screened as ligands against the 2019-nCoV Mpro.
- Absorption, Distribution, Metabolism, Excretion, and Toxicity (ADMET) and Density Functional Theory (DFT) analyses were performed.
Main Results:
- Several phytochemicals demonstrated promising binding affinities to the 2019-nCoV Mpro.
- ADMET and DFT analyses indicated the potential of these compounds as viable drug candidates.
- The study identified specific plant-derived molecules for further investigation as antiviral agents.
Conclusions:
- Computational screening successfully identified potential phytochemical inhibitors for 2019-nCoV Mpro.
- Selected phytochemicals warrant further research and development as therapeutic agents against SARS-CoV-2.
- This study contributes to the search for novel antiviral treatments for the ongoing pandemic.
Abstract:
At the end of December 2019, a novel strain of coronavirus, given the name of 2019-nCoV, emerged for exhibiting symptoms of severe acute respiratory syndrome. The virus is spreading rapidly in China and around the globe, affecting thousands of people leading to a pandemic. To control the mortality rate associated with the 2019-nCoV, prompt steps are needed. Until now there is no effective treatment or drug present to control its life-threatening effects in the humans. The scientist is struggling to find new inhibitors of this deadly virus. In this study, to identify the effective inhibitor candidates against the main protease (Mpro) of 2019-nCoV, computational approaches were adopted. Phytochemicals having immense medicinal properties as ligands were docked against the Mpro of 2019-nCoV to study their binding properties. ADMET and DFT analyses were also further carried out to analyze the potential of these phytochemicals as an effective inhibitor against Mpro of 2019-nCoV.

