Related Experiment Video
Updated: Dec 21, 2025

11:21
Bioinformatics Resources for the Study of Glycan-Mediated Protein Interactions
Published on: January 20, 2022
3.9K
Bioactive structural basis of proteoglycans from Sarcandra glabra based on spectrum-effect relationship
Xuyang Sun1, Qianqian Zhao1, Yu Si1
1Jiangsu Key Laboratory of Druggability of Biopharmaceuticals, State Key Laboratory of Natural Medicines, School of Life Science and Technology, China Pharmaceutical University, Nanjing, 210009, PR China.
Journal of Ethnopharmacology
|May 12, 2020
Summary
This study identified key structural markers in Sarcandra glabra proteoglycans, linking specific monosaccharides and chemical bonds to their antitumor and antioxidant activities for quality control.
Area of Science:
- Phytochemistry
- Pharmacology
- Chemometrics
Background:
- Proteoglycans from Sarcandra glabra exhibit significant antitumor and antioxidant properties.
- Variability in raw material sources can impact the efficacy of natural extracts.
- Accurate identification of S. glabra is crucial for understanding component-activity relationships.
Purpose of the Study:
- To establish a spectrum-effect relationship for Sarcandra glabra proteoglycans.
- To identify bioactive structural markers using chemometric methods.
- To correlate structural characteristics with pharmacological activity.
Main Methods:
- Established multiple fingerprints (HPSEC, PMP-HPLC, FT-IR) for 18 S. glabra proteoglycan batches.
- Assessed antitumor and antioxidant activities.
- Applied mathematical analysis for spectrum-effect relationship determination.
Main Results:
- Principal Component Analysis (PCA) identified monosaccharides (Xyl, Rha, GlcA), carboxyl, peptide, and methylene groups as distinguishing markers.
- Partial Least Squares Discriminant Analysis (PLS-DA) linked GlcA, Xyl, Fuc, β-glycosidic bonds, peptide linkage, and methylene groups to inhibitory activity.
- Xyl, GlcA, GlcN, pyranose ring, carboxyl group, peptide linkage, and methylene structure were associated with antioxidant activity.
Conclusions:
- Spectrum-effect relationship analysis successfully identified material bases influencing pharmacological efficacy.
- This research provides a foundation for understanding structure-activity relationships in Traditional Chinese Medicine glycoconjugates.
Related Concept Videos
Proteoglycans
4.5K
Glycans, a class of complex heterogeneous molecules, can be covalently attached to proteins to form glycosylated proteins that regulate various physiological and pathological processes. Glycosylated proteins or glycoproteins comprise N-linked and O-linked oligosaccharides. O-glycosylation is the most common type of protein glycosylation. Here, glycans attach to the oxygen atom of the hydroxyl groups of Serine or Threonine residues. O-linked glycosylation occurs later in protein processing,...
4.5K
Glycosaminoglycans
6.5K
Glycosaminoglycans (GAGs), also known as mucopolysaccharides, are long and linear polymers comprising of specific repeating disaccharides - the amino sugar that can be N-acetylglucosamine or N-acetylgalactosamine, and a uronic acid that is usually glucuronic acid or iduronic acid.
GAGS are found in the extracellular matrix of vertebrates, invertebrates, and bacteria. Due to their polar nature they attract water, and serve as excellent lubricants or shock absorbers in an animal body.
Hyaluronic...
GAGS are found in the extracellular matrix of vertebrates, invertebrates, and bacteria. Due to their polar nature they attract water, and serve as excellent lubricants or shock absorbers in an animal body.
Hyaluronic...
6.5K
Matrix Proteoglycans and Glycoproteins
4.8K
Proteoglycans are extensively glycosylated proteins, commonly found in the extracellular matrix, interwoven with collagen fibers. Hyaline cartilage, the most common type of cartilage in the body, consists of short and dispersed collagen fibers associated with large amounts of proteoglycans. These proteoglycans have long negative charges that attract cations, which in turn attract water molecules. This influx of ions and water molecules swells up the proteoglycan like a water-soaked gel that can...
4.8K
Protein Glycosylation
9.0K
Glycosylation, the most common post-translational modification for proteins, serves diverse functions. Adding sugars to proteins makes the proteins more resistant to proteolytic digestion. Glycosylated proteins can act as markers and receptors to promote cell-cell adhesion. Additionally, they have many essential quality control functions in the cell, such as correct protein folding and facilitating transport of misfolded proteins to the cytosol, which can be degraded.
Glycosylation occurs in...
Glycosylation occurs in...
9.0K

