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Cell Culture Techniques and Practices to Avoid Contamination by Fungi and Bacteria in the Research Cell Culture Laboratory
Published on: July 7, 2023
Know your enemy: Unexpected, pervasive and persistent viral and bacterial contamination of primary cell cultures
Hanna Niehues1, Patrick A M Jansen1, Diana Rodijk-Olthuis1
1Department of Dermatology, Radboud University Medical Center (Radboudumc), Radboud Institute for Molecular Life Sciences (RIMLS), Nijmegen, The Netherlands.
Abstract:
In biomedical research, cell culture contamination is one of the main culprits of experimental failure. Contamination sources and concomitant remedies are numerous and challenging to manage. We herein describe two cases of uncommon contamination of cell cultures that we encountered, and the successful determination and eradication strategies. The first case describes the infection with human adenovirus C that originated from pharyngeal tonsils used for isolation of primary tonsillar epithelial cells. It is known that viral contamination of in vitro cell cultures can occur symptomless and is therefore difficult to identify. The contamination was pervasive and persistent, as it was widely spread in flow cabinets and apparatus, and has caused a serious delay to our research projects and the inevitable loss of valuable (patient-derived) cell sources. Eradication was successful by formalin gas sterilization of the flow cabinet and elimination of all infected cell lines from our biobank after PCR-guided determination. Secondly, we encountered a spore-forming bacterium, namely Brevibacillus brevis, in our cell culture facility. This bacterium originated from contaminated tap water pipes and spread via regular aseptic culture techniques due to survival of the bacterial spores in 70% ethanol. B brevis overgrew the cultures within a few days after seeding of the primary cells. Chlorine solution effectively killed this spore-forming bacterium. Both cases of contamination were identified using DNA sequencing which enabled the deployment of targeted aseptic techniques for the elimination of the persistent contamination.
Insights
Two uncommon cell culture contaminations, human adenovirus C and Brevibacillus brevis, were successfully identified and eradicated using DNA sequencing and targeted aseptic techniques, preventing further experimental failure.
Area of Science:
- Biomedical Research
- Cell Biology
- Microbiology
Background:
- Cell culture contamination is a significant challenge in biomedical research, leading to experimental failures.
- Identifying and managing diverse contamination sources requires robust strategies.
- Uncommon contaminants pose unique difficulties in detection and eradication.
Purpose of the Study:
- To describe two distinct cases of uncommon cell culture contamination.
- To detail the successful identification and eradication strategies employed.
- To highlight the importance of advanced detection methods for persistent contamination.
Main Methods:
- Case 1: Human adenovirus C contamination identified via PCR and eradicated using formalin gas sterilization and elimination of infected cell lines.
- Case 2: Brevibacillus brevis contamination identified via DNA sequencing and eradicated using chlorine solution.
- Both contaminants were identified using DNA sequencing, enabling targeted aseptic techniques.
Main Results:
- Successful eradication of human adenovirus C from cell culture facilities.
- Successful eradication of spore-forming bacterium Brevibacillus brevis.
- Prevention of further research delays and loss of valuable cell sources.
Conclusions:
- DNA sequencing is crucial for identifying uncommon cell culture contaminants.
- Targeted aseptic techniques, including specific sterilization methods, are effective for eradication.
- Proactive management of cell culture contamination is essential for reliable biomedical research.
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