Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Concept Videos

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

Resolving Conformational Preferences of Monosaccharides from <sup>1</sup>H and <sup>13</sup>C NMR Chemical Shifts Using an Integrated MD and QM Approach.

Journal of chemical information and modeling·2026
Same author

A novel quinazolinone insulin receptor inhibitor and its synergy with an EGFR inhibitor in glucose-driven glioblastoma.

Molecular oncology·2026
Same author

Effects of interfacial hydrogen bonding and electrostatic interactions on the adsorption and foaming properties in saponin mixtures.

Journal of colloid and interface science·2026
Same author

Effect of glycosidic torsional energetics on the conformational properties of polysaccharide chains: a Monte Carlo study.

Carbohydrate research·2026
Same author

Conformational Properties of Single-Chain Polyuronates: A Comparative Molecular Simulation Study of Polyglucuronates, Polygalacturonates, and Alginates.

The journal of physical chemistry. B·2026
Same author

Design, Synthesis, Structure-Activity Relationships, and Preliminary Anticancer Properties of Menthol-Modified Coumarin Esters and 3,4-Dihydrocoumarin Derivatives.

ACS omega·2025

Related Experiment Video

Updated: Dec 17, 2025

Multiscale Sampling of a Heterogeneous Water/Metal Catalyst Interface using Density Functional Theory and Force-Field Molecular Dynamics
10:52

Multiscale Sampling of a Heterogeneous Water/Metal Catalyst Interface using Density Functional Theory and Force-Field Molecular Dynamics

Published on: April 12, 2019

13.2K

Efficient sampling of high-energy states by machine learning force fields.

Wojciech Plazinski1, Anita Plazinska, Agnieszka Brzyska

  • 1Jerzy Haber Institute of Catalysis and Surface Chemistry Polish Academy of Sciences, Niezapominajek 8, 30-239 Krakow, Poland. wojtek_plazinski@o2.pl.

Physical Chemistry Chemical Physics : PCCP
|June 23, 2020
PubMed
Summary
This summary is machine-generated.

Machine learning force fields achieve high accuracy by learning potential energy surfaces. Biased subsampling of configurations is crucial for capturing high-energy states and ensuring accuracy across the entire configurational phase space.

More Related Videos

Structure-Based Simulation and Sampling of Transcription Factor Protein Movements along DNA from Atomic-Scale Stepping to Coarse-Grained Diffusion
09:17

Structure-Based Simulation and Sampling of Transcription Factor Protein Movements along DNA from Atomic-Scale Stepping to Coarse-Grained Diffusion

Published on: March 1, 2022

3.5K
Computation of Atmospheric Concentrations of Molecular Clusters from ab initio Thermochemistry
12:11

Computation of Atmospheric Concentrations of Molecular Clusters from ab initio Thermochemistry

Published on: April 8, 2020

8.6K

Related Experiment Videos

Last Updated: Dec 17, 2025

Multiscale Sampling of a Heterogeneous Water/Metal Catalyst Interface using Density Functional Theory and Force-Field Molecular Dynamics
10:52

Multiscale Sampling of a Heterogeneous Water/Metal Catalyst Interface using Density Functional Theory and Force-Field Molecular Dynamics

Published on: April 12, 2019

13.2K
Structure-Based Simulation and Sampling of Transcription Factor Protein Movements along DNA from Atomic-Scale Stepping to Coarse-Grained Diffusion
09:17

Structure-Based Simulation and Sampling of Transcription Factor Protein Movements along DNA from Atomic-Scale Stepping to Coarse-Grained Diffusion

Published on: March 1, 2022

3.5K
Computation of Atmospheric Concentrations of Molecular Clusters from ab initio Thermochemistry
12:11

Computation of Atmospheric Concentrations of Molecular Clusters from ab initio Thermochemistry

Published on: April 8, 2020

8.6K

Area of Science:

  • Molecular sciences
  • Computational chemistry
  • Materials science

Background:

  • Machine learning (ML) methods offer a powerful approach to bridge the accuracy of ab initio calculations with the efficiency of classical molecular mechanics.
  • ML algorithms reconstruct potential energy surfaces from reference data, creating computationally inexpensive force fields for molecular systems.
  • The accuracy of ML force fields is critically dependent on the training dataset's quality and coverage.

Purpose of the Study:

  • To address the limitations of standard ML training datasets that may omit high-energy states.
  • To propose and validate a novel method for generating ML input data that ensures accuracy across the entire configurational phase space.
  • To improve the reliability of ML force fields for molecular simulations.

Main Methods:

  • Development of a biased subsampling strategy for generating ML training data.
  • Targeted inclusion of configurations from high-energy states and energy barriers.
  • Application of the method to conformational rearrangements in flexible heterocyclic molecules.

Main Results:

  • Demonstration that omitting high-energy states can lead to significant accuracy loss in ML force fields.
  • Validation of the biased subsampling approach for enhancing the representation of critical configurational regions.
  • Successful application to conformational analysis of heterocyclic systems, improving force field accuracy.

Conclusions:

  • Biased subsampling of configurations is essential for creating robust ML force fields that are accurate across the entire configurational phase space.
  • This method overcomes the limitations of datasets following Boltzmann distribution, particularly for systems with energy barriers.
  • The proposed data generation strategy is a key component for developing reliable and broadly applicable ML force fields in molecular sciences.