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Updated: Dec 13, 2025

3D Multicolor DNA FISH Tool to Study Nuclear Architecture in Human Primary Cells
Published on: January 25, 2020
Three-dimensional super-resolution fluorescence imaging of DNA
Sevim Yardimci1, Daniel R Burnham1, Samantha Y A Terry2
1Single Molecule Imaging of Genome Duplication and Maintenance Laboratory, The Francis Crick Institute, London, UK.
We developed a 3D super-resolution imaging method combining binding activated localization microscopy (BALM) and optical astigmatism to visualize DNA structures. This technique reveals intricate details of DNA molecules and chromosome architecture.
Area of Science:
- Cellular Biology
- Microscopy
- Biophysics
Background:
- Super-resolution microscopy offers unprecedented detail of cellular structures.
- Visualizing DNA at high resolution is crucial for understanding cellular processes.
Purpose of the Study:
- To develop a 3D super-resolution imaging technique for DNA.
- To visualize DNA at the nanoscale within complex cellular environments.
Main Methods:
- Combined binding activated localization microscopy (BALM) with optical astigmatism.
- Utilized fluorescent double-stranded DNA intercalators (bis- and mono-).
- Visualized single DNA molecules and metaphase chromosomes.
Main Results:
- Quantitatively established the superiority of bis-intercalators over mono-intercalators for BALM.
- Successfully visualized single DNA molecules at various heights.
- Unravelled structural features of intact and damaged metaphase chromosomes with 3D super-resolution.
Conclusions:
- The developed BALM-based 3D super-resolution method enables detailed visualization of DNA.
- This technique provides new insights into DNA organization and chromosome structure.
- Optical astigmatism combined with BALM is effective for nanoscale imaging of DNA.
Related Concept Videos
Super-resolution Fluorescence Microscopy
Three-Dimensional Microscopy in Microbiology
Confocal Fluorescence Microscopy

