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Updated: Dec 13, 2025

Capturing Actively Produced Microbial Volatile Organic Compounds from Human-Associated Samples with Vacuum-Assisted Sorbent Extraction
Published on: June 1, 2022
Pre-analytical and analytical variables that influence urinary volatile organic compound measurements
Michael McFarlanE1, Ella MozdiaK1, Emma Daulton2
1Department of Gastroenterology, University Hospitals Coventry and Warwickshire, Coventry, United Kingdom.
Storing urine samples at room temperature before freezing significantly impacts volatile organic compound (VOC) profiles. For accurate VOC analysis using Field Asymmetric Ion Motility Spectrometry (FAIMS), limit room temperature storage to 12 hours.
Area of Science:
- Analytical Chemistry
- Biomedical Diagnostics
- Metabolomics
Background:
- Volatile organic compounds (VOCs) show promise for non-invasive medical diagnostics.
- Standardization of sample collection and storage is crucial for reliable VOC analysis.
- Limited understanding exists regarding the impact of pre-analytical variables, such as sample storage, on VOC profiles.
Purpose of the Study:
- To investigate the effect of varying room temperature storage durations on urine VOC profiles.
- To assess the impact of storage time on total ion count and VOC degradation.
- To establish optimal storage guidelines for urine samples intended for VOC analysis.
Main Methods:
- Urine samples from healthy individuals were sealed and stored at room temperature for different durations before freezing.
- Field Asymmetric Ion Motility Spectrometry (FAIMS) was employed to analyze VOC profiles.
- Changes in VOC profiles and total ion counts were quantified over time.
Main Results:
- Increased storage time at room temperature led to greater variability in urinary VOC profiles.
- A plateau in VOC profile variability was observed between 12 and 48 hours, followed by degradation.
- Total ion count increased with prolonged room temperature exposure.
- Deterioration of VOCs was noted during the analytical process with extended storage.
Conclusions:
- Room temperature storage significantly alters urine VOC profiles, affecting diagnostic accuracy.
- A maximum of 12 hours at room temperature before freezing is recommended for urine sample storage.
- These findings are critical for standardizing protocols in VOC-based diagnostics using FAIMS.
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