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A Metadata Extraction Approach for Clinical Case Reports to Enable Advanced Understanding of Biomedical Concepts
Published on: September 20, 2018
Enhancing Traceability in Clinical Research Data through a Metadata Framework
Samuel Hume1, Surendra Sarnikar2, Cherie Noteboom3
1Department of Data Science, CDISC, State College, Pennsylvania, United States.
This study introduces Trace-XML, a framework enhancing metadata traceability in clinical research. It improves data lineage and reproducibility by identifying and validating traceability gaps across the data lifecycle.
Area of Science:
- Biomedical Informatics
- Data Science
- Clinical Research Informatics
Background:
- Clinical research data lifecycle operates in silos, limiting traceability.
- Traceability is crucial for regulated and non-regulated studies.
- Existing tools offer limited metadata traceability and cross-phase querying.
Purpose of the Study:
- Develop a metadata traceability framework for querying and visualizing traceability.
- Identify and validate traceability gaps to improve data lineage and reproducibility.
Main Methods:
- Employed the design science research paradigm to create and evaluate an IT artifact.
- Developed Trace-XML, a framework extending metadata models and using graph traversal algorithms.
- Evaluated Trace-XML using analytical and qualitative methods.
Main Results:
- Trace-XML accurately and completely assesses metadata traceability.
- Qualitative analysis confirmed Trace-XML's utility for researchers.
- The framework enables querying, validation, and visualization of traceability metadata.
Conclusions:
- Trace-XML effectively addresses the problem of limited metadata traceability in clinical research.
- The framework enhances the ability to create and assess end-to-end study traceability.
- Trace-XML provides essential features for identifying gaps, validating, and visualizing metadata traceability.
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