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Learning structured medical information from social media.

Abul Hasan1, Mark Levene1, David Weston1

  • 1Department of Computer Science and Information Systems, Birkbeck, University of London, London WC1E 7HX, United Kingdom.

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|September 17, 2020
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Summary

This study introduces a semi-supervised machine learning method to extract disease symptoms and treatment effects from social media. The approach enhances data analysis by continuously training on new information, improving medical concept extraction.

Keywords:
Conditional random fieldsMedical concept extractionPharmacovigilanceSemi-supervised algorithmSocial media mining

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Area of Science:

  • Computational linguistics
  • Medical informatics
  • Machine learning

Background:

  • Social media platforms generate vast amounts of unstructured text data relevant to public health.
  • Extracting medical information from this data is challenging due to noise and the continuous influx of new content.

Purpose of the Study:

  • To develop and evaluate a semi-supervised machine learning methodology for automatically extracting medical concepts from social media.
  • To enable continuous re-training of models with new, streaming data for improved medical information aggregation.

Main Methods:

  • A supervised machine learning approach was initially used for medical concept extraction.
  • A semi-supervised methodology was developed for incremental re-training, utilizing both labeled and unlabeled data.
  • Conditional Random Field (CRF) was employed as the baseline algorithm, iteratively augmented with high-confidence sentences and dictionary terms.

Main Results:

  • The baseline CRF model demonstrated strong performance, achieving F1 scores of 84%-90% with full training data.
  • The semi-supervised methodology showed a mild but significant improvement over the baseline model.
  • Empirical results indicated the semi-supervised approach is significantly more accurate in most cases than the baseline.

Conclusions:

  • Semi-supervised learning offers a viable and effective approach for continuous medical concept extraction from dynamic social media data.
  • The developed methodology enhances the accuracy and efficiency of aggregating public health information from online sources.
  • This work contributes to better understanding disease symptoms and treatment effects through advanced natural language processing techniques.