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Published on: July 19, 2019
Gaussian process model of 51-dimensional potential energy surface for protonated imidazole dimer
Hiroki Sugisawa1, Tomonori Ida2, R V Krems1
1Department of Chemistry, University of British Columbia, Vancouver, British Columbia V6T 1Z1, Canada.
This study introduces Gaussian processes (GPs) for accurate potential energy surface (PES) modeling in complex molecular systems. GPs enable precise PES prediction with minimal ab initio data, crucial for high-dimensional chemistry problems.
Area of Science:
- Computational Chemistry
- Materials Science
- Quantum Mechanics
Background:
- Accurate potential energy surfaces (PESs) are crucial for understanding molecular behavior.
- High-dimensional molecular systems pose significant computational challenges for PES calculations.
- Traditional methods require extensive ab initio computations, limiting applicability.
Purpose of the Study:
- To develop a system-agnostic method for accurate PES generation using limited ab initio data.
- To leverage Gaussian processes (GPs) for efficient modeling of high-dimensional PESs.
- To demonstrate the extrapolation capabilities of GP models for PES prediction.
Main Methods:
- Probabilistic modeling using Gaussian processes (GPs).
- Utilizing composite kernels to enhance Bayesian information content.
- Representing the global PES as a sum of full-dimensional and fragment-based GP models.
- Application to a 51-dimensional PES and the protonated imidazole dimer (19 atoms).
Main Results:
- Achieved global accuracy of <0.2 kcal/mol for a 51-dimensional PES using 5000 ab initio calculations.
- Successfully constructed the global PES for the protonated imidazole dimer.
- Demonstrated accurate extrapolation of PES from low (<10,000 cm⁻¹) to high (>20,000 cm⁻¹) energies.
Conclusions:
- Gaussian processes provide an efficient and accurate approach for high-dimensional PES modeling.
- The method significantly reduces the number of required ab initio calculations.
- GP extrapolation capabilities open new avenues for studying phase transitions and accelerating Bayesian optimization in complex systems.
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