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Integration of Wet and Dry Bench Processes Optimizes Targeted Next-generation Sequencing of Low-quality and Low-quantity Tumor Biopsies
Published on: April 11, 2016
Real-world data from a molecular tumor board demonstrates improved outcomes with a precision N-of-One strategy
Shumei Kato1, Ki Hwan Kim2,3, Hyo Jeong Lim4,5
1Center for Personalized Cancer Therapy and Division of Hematology and Oncology, Department of Medicine, UC San Diego Moores Cancer Center, La Jolla, CA, USA. smkato@ucsd.edu.
Abstract:
Next-generation sequencing (NGS) can identify novel cancer targets. However, interpreting the molecular findings and accessing drugs/clinical trials is challenging. Furthermore, many tumors show resistance to monotherapies. To implement a precision strategy, we initiated a multidisciplinary (basic/translational/clinical investigators, bioinformaticians, geneticists, and physicians from multiple specialties) molecular tumor board (MTB), which included a project manager to facilitate obtaining clinical-grade biomarkers (blood/tissue NGS, specific immunohistochemistry/RNA expression including for immune-biomarkers, per physician discretion) and medication-acquisition specialists/clinical trial coordinators/navigators to assist with medication access. The MTB comprehensively reviewed patient characteristics to develop N-of-One treatments implemented by the treating physician's direction under the auspices of a master protocol. Overall, 265/429 therapy-evaluable patients (62%) were matched to ≥1 recommended drug. Eighty-six patients (20%) matched to all drugs recommended by MTB, including combinatorial approaches, while 38% received physician's choice regimen, generally with unmatched approach/low degree of matching. Our results show that patients who receive MTB-recommended regimens (versus physician choice) have significantly longer progression-free (PFS) and overall survival (OS), and are better matched to therapy. High (≥50%) versus low (<50%) Matching Score therapy (roughly reflecting therapy matched to ≥50% versus <50% of alterations) independently correlates with longer PFS (hazard ratio [HR], 0.63; 95% confidence interval [CI], 0.50-0.80; P < 0.001) and OS (HR, 0.67; 95% CI, 0.50-0.90; P = 0.007) and higher stable disease ≥6 months/partial/complete remission rate (52.1% versus 30.4% P < 0.001) (all multivariate). In conclusion, patients who receive MTB-based therapy are better matched to their genomic alterations, and the degree of matching is an independent predictor of improved oncologic outcomes including survival.
Insights
A multidisciplinary molecular tumor board (MTB) improves precision cancer therapy by matching patients to targeted drugs. This approach significantly enhances progression-free survival (PFS) and overall survival (OS) compared to standard care.
Area of Science:
- Oncology
- Genomics
- Precision Medicine
Background:
- Next-generation sequencing (NGS) identifies cancer targets but faces challenges in interpreting results and accessing therapies.
- Tumor resistance to monotherapies necessitates advanced treatment strategies.
- Integrating molecular findings with clinical decision-making is crucial for effective cancer care.
Purpose of the Study:
- To establish and evaluate a multidisciplinary molecular tumor board (MTB) for precision cancer therapy.
- To assess the impact of MTB-recommended treatments on patient outcomes, including progression-free survival (PFS) and overall survival (OS).
- To determine the correlation between the degree of molecular alteration matching and therapeutic efficacy.
Main Methods:
- Initiation of a multidisciplinary MTB involving investigators, bioinformaticians, geneticists, and physicians.
- Facilitation of clinical-grade biomarker acquisition (NGS, IHC, RNA expression) and medication/trial access.
- Comprehensive review of patient data to develop N-of-One treatment recommendations under a master protocol.
Main Results:
- 62% of therapy-evaluable patients were matched to at least one recommended drug.
- Patients receiving MTB-recommended regimens showed significantly longer PFS and OS compared to physician's choice.
- A higher Matching Score (≥50% of alterations matched) independently correlated with improved PFS, OS, and response rates.
Conclusions:
- MTB-based therapy enhances the matching of treatments to patients' genomic alterations.
- The degree of matching to genomic alterations is an independent predictor of improved oncologic outcomes.
- Implementing molecular tumor boards is a viable strategy for advancing precision oncology and improving patient survival.
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