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Updated: Dec 1, 2025

09:55
Exploring the Root Microbiome: Extracting Bacterial Community Data from the Soil, Rhizosphere, and Root Endosphere
Published on: May 2, 2018
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Culture-based Methods for Studying the Bacterial Root Microbiome of Wheat
Rebekah J Robinson1, Vanessa N Kavamura1, Penny R Hirsch1
1Department of Sustainable Agriculture Sciences, Rothamsted Research, Harpenden, Herts, UK.
Methods in Molecular Biology (Clifton, N.J.)
|November 8, 2020
Abstract:
Beneficial plant-microbe interactions are important and desirable for sustainable intensification of agriculture. Here, we describe methods to isolate microbes from the roots of field-grown wheat plants. This includes the rhizosphere and rhizoplane soil, as well as the root endosphere. We also describe a method to test for endosphere competence of putative endophytes.

