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Published on: April 4, 2018
Biallelic variants in HPDL, encoding 4-hydroxyphenylpyruvate dioxygenase-like protein, lead to an infantile
Shereen G Ghosh1,2, Sangmoon Lee1,2, Rudy Fabunan3
1Department of Neurosciences, University of California-San Diego, La Jolla, CA, USA.
Insights
Genetic variants in the 4-hydroxyphenylpyruvate dioxygenase-like protein (HPDL) gene cause a rare mitochondrial infantile neurodegenerative disease. This discovery links HPDL to a novel neurometabolic disorder.
Area of Science:
- Biochemistry
- Genetics
- Neuroscience
Background:
- Dioxygenases are crucial oxidoreductase enzymes for aerobic metabolism.
- 4-hydroxyphenylpyruvate dioxygenase-like protein (HPDL) is an orphan paralogue of 4-hydroxyphenylpyruvate dioxygenase (HPD).
- The function of HPDL and its role in human diseases were previously unknown.
Purpose of the Study:
- To investigate the function of HPDL and its potential association with human diseases.
- To explore the evolutionary relationship between HPDL and HPD.
Main Methods:
- Exome sequencing in over 10,000 individuals with neurodevelopmental diseases.
- In vitro and in vivo studies of HPDL loss-of-function effects.
- Mass spectrometry and evolutionary analyses.
Main Results:
- Biallelic HPDL variants were identified in eight families with recessive inheritance.
- HPDL knockout mice models recapitulated human phenotypes, showing cerebral cortex apoptosis.
- HPDL is a mitochondria-localized, single-exonic gene, distinct from HPD, with altered metabolic profiles in mutants.
Conclusions:
- HPDL loss is linked to a novel mitochondrial infantile neurodegenerative condition.
- Mitochondrial localization and disrupted metabolic pathways are key features of HPDL-related disease.
- This study elucidates the function of HPDL and its implication in human pathology.
Purpose:
Dioxygenases are oxidoreductase enzymes with roles in metabolic pathways necessary for aerobic life. 4-hydroxyphenylpyruvate dioxygenase-like protein (HPDL), encoded by HPDL, is an orphan paralogue of 4-hydroxyphenylpyruvate dioxygenase (HPD), an iron-dependent dioxygenase involved in tyrosine catabolism. The function and association of HPDL with human diseases remain unknown.
Methods:
We applied exome sequencing in a cohort of over 10,000 individuals with neurodevelopmental diseases. Effects of HPDL loss were investigated in vitro and in vivo, and through mass spectrometry analysis. Evolutionary analysis was performed to investigate the potential functional separation of HPDL from HPD.
Results:
We identified biallelic variants in HPDL in eight families displaying recessive inheritance. Knockout mice closely phenocopied humans and showed evidence of apoptosis in multiple cellular lineages within the cerebral cortex. HPDL is a single-exonic gene that likely arose from a retrotransposition event at the base of the tetrapod lineage, and unlike HPD, HPDL is mitochondria-localized. Metabolic profiling of HPDL mutant cells and mice showed no evidence of altered tyrosine metabolites, but rather notable accumulations in other metabolic pathways.
Conclusion:
The mitochondrial localization, along with its disrupted metabolic profile, suggests HPDL loss in humans links to a unique neurometabolic mitochondrial infantile neurodegenerative condition.
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