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A novel fitness function in genetic programming for medical data classification.

Arvind Kumar1, Nishant Sinha2, Arpit Bhardwaj3

  • 1Department of Computer Science Engineering, Bennett University, Greater Noida, India; Pitney Bowes Software, Noida, India.

Journal of Biomedical Informatics
|November 16, 2020
PubMed
Summary

This study introduces a new Genetic Programming fitness function to address imbalanced medical datasets for machine learning classification. The novel method improves disease identification accuracy, enhancing early diagnosis and patient survival rates.

Keywords:
Fitness functionGenetic ProgrammingMedical data classificationUnbalanced data classification

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Area of Science:

  • Medical Informatics
  • Computational Biology
  • Machine Learning

Background:

  • Machine learning (ML) is crucial for early disease diagnosis, but medical datasets are often imbalanced, leading to biased classification.
  • Imbalanced data poses a significant challenge for ML algorithms, potentially hindering accurate disease identification and patient outcomes.

Purpose of the Study:

  • To propose a novel fitness function in Genetic Programming (GP) specifically designed to handle imbalanced medical datasets.
  • To improve the accuracy and reliability of ML-based classification for various diseases using the proposed technique.

Main Methods:

  • Developed a novel fitness function within Genetic Programming (GP) to address data imbalance in medical classification tasks.
  • Utilized four benchmark medical datasets: chronic kidney disease (CKD), fertility, BUPA liver disorder, and Wisconsin diagnostic breast cancer (WDBC) from the UCI repository.
  • Applied the proposed GP technique for classification on these datasets.

Main Results:

  • Achieved high classification accuracy: 100% for CKD, 99.12% for WDBC, 85.0% for Fertility, and 75.36% for BUPA liver disorder.
  • Obtained excellent Area Under the Curve (AUC) values: 1.0 for CKD, 0.99 for WDBC, 0.92 for Fertility, and 0.75 for BUPA liver disorder.
  • Demonstrated superior performance compared to existing GP and Support Vector Machine (SVM) methods.

Conclusions:

  • The proposed Genetic Programming fitness function effectively handles imbalanced medical data, leading to improved classification accuracy.
  • This novel approach enhances the potential for reliable early disease diagnosis, contributing to better patient survival.
  • The algorithm's efficiency and improved outcomes confirm its value in medical data analysis and machine learning applications.