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Conventional BODIPY Conjugates for Live-Cell Super-Resolution Microscopy and Single-Molecule Tracking
Published on: June 8, 2020
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BODIPY based red emitters: Synthesis, computational and biological studies.
Vijayalakshmi Pandey1, Md Kausar Raza2, Mridupavan Sonowal1
1Indian Institute of Technology Gandhinagar, Palaj Campus, Gandhinagar, Gujarat 382355, India.
Bioorganic Chemistry
|November 23, 2020
Summary
New red-emitting BODIPY dyes show promise as theranostic agents. These novel compounds exhibit cancer cell localization and cytotoxicity, paving the way for advanced cancer diagnostics and therapeutics.
Area of Science:
- Organic Chemistry
- Materials Science
- Biomedical Engineering
Background:
- Boron-dipyrromethene (BODIPY) dyes are versatile fluorophores.
- Developing red-emitting BODIPYs is crucial for biological imaging and therapy due to reduced autofluorescence and enhanced tissue penetration.
Purpose of the Study:
- To synthesize and characterize novel donor-acceptor type BODIPY dyes with strong absorption and fluorescence in the red region (550-800 nm).
- To investigate the photophysical properties, cellular localization, and cytotoxic effects of these BODIPY derivatives for potential theranostic applications.
Main Methods:
- Synthesis of BODIPY derivatives with N-butylcarbazole, N-butylphenothiazine, or benzothiadiazole groups attached at the C-8 position via furan or thiophene spacers.
- Theoretical studies using Time-Dependent Density Functional Theory (TD-DFT) to analyze charge distribution.
- In vitro studies involving incubation with cancer cells (HeLa and A549) to assess cellular localization (endoplasmic reticulum, lysosomes) and cytotoxicity.
Main Results:
- Synthesized BODIPY dyes exhibit strong absorption and fluorescence in the red spectral region.
- TD-DFT studies confirmed significant charge transfer between the C-8 aromatic heterocycles and the BODIPY core.
- N-butylcarbazole substituted BODIPYs showed preferential localization in the endoplasmic reticulum and lysosomes of cancer cells.
- The BODIPY derivatives displayed moderate cytotoxicity against HeLa and A549 cancer cells (14.9 to 31.8 μM) after 48 hours of incubation.
Conclusions:
- Novel red-emitting BODIPY dyes have been successfully synthesized and characterized.
- These BODIPY derivatives possess favorable photophysical properties and demonstrate specific cellular uptake and cytotoxic activity.
- The findings suggest potential applications of these BODIPY compounds as theranostic agents for cancer treatment and imaging.

