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Updated: Nov 27, 2025

Incorporating Target Protein Structure Flexibility and Dynamics in Computational Drug Discovery Using Ensemble-Based Docking Analysis
Published on: June 20, 2025
Interaction of nanoparticles with biological macromolecules: a review of molecular docking studies
Abdallah S Abdelsattar1, Alyaa Dawoud2, Mohamed A Helal3,4
1Center for X-Ray and Determination of Structure of Matter, Zewail City of Science and Technology, Giza, Egypt.
Abstract:
The high frequency of using engineered nanoparticles in various medical applications entails a deep understanding of their interaction with biological macromolecules. Molecular docking simulation is now widely used to study the binding of different types of nanoparticles with proteins and nucleic acids. This helps not only in understanding the mechanism of their biological action but also in predicting any potential toxicity. In this review, the computational techniques used in studying the nanoparticles interaction with biological macromolecules are covered. Then, a comprehensive overview of the docking studies performed on various types of nanoparticles will be offered. The implication of these predicted interactions in the biological activity and/or toxicity is also discussed for each type of nanoparticles.
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