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Generating high-fidelity synthetic patient data for assessing machine learning healthcare software
Allan Tucker1, Zhenchen Wang2, Ylenia Rotalinti3
1Department of Computer Science, Brunel University London, London, UK. allan.tucker@brunel.ac.uk.
NPJ Digital Medicine
|December 10, 2020
Summary
This study introduces a novel method for generating realistic synthetic patient data, safeguarding privacy in healthcare artificial intelligence. The approach effectively minimizes patient re-identification risks while preserving data complexity.
Area of Science:
- Health Informatics
- Artificial Intelligence in Healthcare
- Data Privacy
Background:
- Growing demand for AI in healthcare relies on patient data.
- Patient privacy concerns hinder the use of historical health data.
- Synthetic data offers a privacy-preserving alternative.
Purpose of the Study:
- To develop a method for generating realistic synthetic patient data from UK primary care records.
- To address privacy issues associated with using real patient data for AI models.
- To quantify the risk of patient re-identification from synthetic data.
Main Methods:
- Integration of resampling, probabilistic graphical modelling, latent variable identification, and outlier analysis.
- Focus on handling missing data and complex variable interactions.
- Sensitivity analysis of machine learning classifiers and re-identification risk assessment.
Main Results:
- Synthetic data closely matches original data in feature distributions and dependencies.
- Machine learning classifier performance is comparable between real and synthetic data.
- The risk of generating synthetic data identical or very similar to real patients is low.
Conclusions:
- The integrated approach successfully generates realistic synthetic health data.
- This method enhances data utility for AI while mitigating privacy risks.
- The developed technique offers a viable solution for privacy-preserving healthcare analytics.

