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Updated: Nov 22, 2025

Author Spotlight: Investigating Bacteriophage-Induced Immune Responses in Gnotobiotic Mice
Published on: January 26, 2024
Phage infection and sub-lethal antibiotic exposure mediate Enterococcus faecalis type VII secretion system dependent
Anushila Chatterjee1, Julia L E Willett2, Gary M Dunny2
1Department of Immunology and Microbiology, University of Colorado School of Medicine, Aurora, CO, United States of America.
Abstract:
Bacteriophages (phages) are being considered as alternative therapeutics for the treatment of multidrug resistant bacterial infections. Considering phages have narrow host-ranges, it is generally accepted that therapeutic phages will have a marginal impact on non-target bacteria. We have discovered that lytic phage infection induces transcription of type VIIb secretion system (T7SS) genes in the pathobiont Enterococcus faecalis. Membrane damage during phage infection induces T7SS gene expression resulting in cell contact dependent antagonism of different Gram positive bystander bacteria. Deletion of essB, a T7SS structural component, abrogates phage-mediated killing of bystanders. A predicted immunity gene confers protection against T7SS mediated inhibition, and disruption of its upstream LXG toxin gene rescues growth of E. faecalis and Staphylococcus aureus bystanders. Phage induction of T7SS gene expression and bystander inhibition requires IreK, a serine/threonine kinase, and OG1RF_11099, a predicted GntR-family transcription factor. Additionally, sub-lethal doses of membrane targeting and DNA damaging antibiotics activated T7SS expression independent of phage infection, triggering T7SS antibacterial activity against bystander bacteria. Our findings highlight how phage infection and antibiotic exposure of a target bacterium can affect non-target bystander bacteria and implies that therapies beyond antibiotics, such as phage therapy, could impose collateral damage to polymicrobial communities.
Insights
Bacteriophage therapy can harm bystander bacteria. Phage infection or antibiotics can activate bacterial secretion systems, leading to unintended killing of beneficial microbes in polymicrobial communities.
Area of Science:
- Microbiology
- Bacteriology
- Molecular Biology
Background:
- Bacteriophages (phages) are explored as alternatives to antibiotics for multidrug-resistant infections.
- Phages are typically assumed to have minimal impact on non-target bacteria due to their narrow host ranges.
- The potential for collateral damage to microbial communities by phage therapy is not well understood.
Purpose of the Study:
- To investigate the impact of lytic phage infection on non-target bacteria.
- To determine the mechanisms by which phages affect bystander bacteria.
- To explore if other treatments, like antibiotics, can induce similar effects.
Main Methods:
- Lytic phage infection of Enterococcus faecalis.
- Gene expression analysis of type VIIb secretion system (T7SS) genes.
- Deletion mutagenesis of T7SS components (essB) and regulatory genes (IreK, OG1RF_11099).
- Assays for bystander bacterial killing and protection mechanisms.
- Exposure to sub-lethal antibiotic doses.
Main Results:
- Phage infection induces T7SS gene expression in E. faecalis.
- Induced T7SS mediates contact-dependent killing of Gram-positive bystander bacteria.
- Deletion of T7SS genes or disruption of toxin/immunity genes abrogates bystander killing.
- Phage-induced T7SS activation requires specific kinases and transcription factors.
- Antibiotics also activate T7SS and bystander killing.
Conclusions:
- Phage infection can lead to collateral damage to bystander bacteria via T7SS activation.
- This mechanism highlights potential unintended consequences of phage therapy in polymicrobial environments.
- Antibiotic exposure can also trigger T7SS-mediated collateral damage, suggesting broader implications for microbial community disruption.
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