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Updated: Nov 22, 2025

Identification of MyoD Interactome Using Tandem Affinity Purification Coupled to Mass Spectrometry
Published on: May 17, 2016
Interaction between SNAI2 and MYOD enhances oncogenesis and suppresses differentiation in Fusion Negative
Silvia Pomella1,2, Prethish Sreenivas3, Berkley E Gryder2
1Department of Pediatric Hematology and Oncology, Bambino Gesù Children's Hospital, IRCCS, Rome, Italy.
Abstract:
Rhabdomyosarcoma (RMS) is an aggressive pediatric malignancy of the muscle, that includes Fusion Positive (FP)-RMS harboring PAX3/7-FOXO1 and Fusion Negative (FN)-RMS commonly with RAS pathway mutations. RMS express myogenic master transcription factors MYOD and MYOG yet are unable to terminally differentiate. Here, we report that SNAI2 is highly expressed in FN-RMS, is oncogenic, blocks myogenic differentiation, and promotes growth. MYOD activates SNAI2 transcription via super enhancers with striped 3D contact architecture. Genome wide chromatin binding analysis demonstrates that SNAI2 preferentially binds enhancer elements and competes with MYOD at a subset of myogenic enhancers required for terminal differentiation. SNAI2 also suppresses expression of a muscle differentiation program modulated by MYOG, MEF2, and CDKN1A. Further, RAS/MEK-signaling modulates SNAI2 levels and binding to chromatin, suggesting that the differentiation blockade by oncogenic RAS is mediated in part by SNAI2. Thus, an interplay between SNAI2, MYOD, and RAS prevents myogenic differentiation and promotes tumorigenesis.
Insights
SNAI2 oncogene blocks muscle cell differentiation in pediatric rhabdomyosarcoma (RMS). It interacts with MYOD and RAS signaling, promoting tumor growth and preventing normal muscle development.
Area of Science:
- Oncology
- Molecular Biology
- Developmental Biology
Background:
- Rhabdomyosarcoma (RMS) is a pediatric muscle cancer.
- Fusion Positive (FP)-RMS has PAX3/7-FOXO1, Fusion Negative (FN)-RMS often has RAS mutations.
- RMS cells express myogenic factors but fail terminal differentiation.
Purpose of the Study:
- Investigate the role of SNAI2 in Fusion Negative Rhabdomyosarcoma.
- Determine how SNAI2 impacts myogenic differentiation and tumor growth.
- Elucidate the interplay between SNAI2, MYOD, and RAS signaling in RMS.
Main Methods:
- Chromatin binding analysis to map SNAI2 and MYOD interactions.
- Gene expression analysis of myogenic differentiation markers.
- Assessment of SNAI2 expression in FN-RMS samples.
Main Results:
- SNAI2 is highly expressed in FN-RMS and promotes tumor growth.
- SNAI2 blocks myogenic differentiation by competing with MYOD at enhancers.
- RAS/MEK signaling influences SNAI2 levels and chromatin binding.
Conclusions:
- SNAI2 is an oncogene that inhibits muscle cell differentiation in RMS.
- SNAI2, MYOD, and RAS signaling create a differentiation blockade promoting tumorigenesis.
- Targeting SNAI2 may offer a therapeutic strategy for FN-RMS.
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