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Updated: Nov 21, 2025

Isolation and Quantification of Epstein-Barr Virus from the P3HR1 Cell Line
Published on: September 28, 2022
RNA m6 A methylation regulates virus-host interaction and EBNA2 expression during Epstein-Barr virus infection
Xiang Zheng1,2,3,4, Jia Wang1,2,4,5, Xiaoyue Zhang2,4
1Hunan Cancer Hospital, The Affiliated Cancer Hospital of Xiangya School of Medicine, Central South University, Changsha, Hunan, China.
Introduction:
N6 -methyladenosine (m6 A) is the most prevalent modification that occurs in messenger RNA (mRNA), affecting mRNA splicing, translation, and stability. This modification is reversible, and its related biological functions are mediated by "writers," "erasers," and "readers." The field of viral epitranscriptomics and the role of m6 A modification in virus-host interaction have attracted much attention recently. When Epstein-Barr virus (EBV) infects a human B lymphocyte, it goes through three phases: the pre-latent phase, latent phase, and lytic phase. Little is known about the viral and cellular m6 A epitranscriptomes in EBV infection, especially in the pre-latent phase during de novo infection.
Methods:
Methylated RNA immunoprecipitation sequencing (MeRIP-seq) and MeRIP-RT-qPCR were used to determine the m6 A-modified transcripts during de novo EBV infection. RIP assay was used to confirm the binding of EBNA2 and m6 A readers. Quantitative reverse-transcription polymerase chain reaction (RT-qPCR) and Western blot analysis were performed to test the effect of m6 A on the host and viral gene expression.
Results:
Here, we provided mechanistic insights by examining the viral and cellular m6 A epitranscriptomes during de novo EBV infection, which is in the pre-latent phase. EBV EBNA2 and BHRF1 were highly m6 A-modified upon EBV infection. Knockdown of METTL3 (a "writer") decreased EBNA2 expression levels. The emergent m6 A modifications induced by EBV infection preferentially distributed in 3' untranslated regions of cellular transcripts, while the lost m6 A modifications induced by EBV infection preferentially distributed in coding sequence regions of mRNAs. EBV infection could influence the host cellular m6 A epitranscriptome.
Conclusions:
These results reveal the critical role of m6 A modification in the process of de novo EBV infection.
Insights
Epstein-Barr virus (EBV) infection alters N-methyladenosine (m6A) RNA modifications in both viral and host cells. These m6A changes are crucial for the early stages of EBV infection and virus-host interactions.
Area of Science:
- Virology
- Molecular Biology
- Epigenetics
Background:
- N-methyladenosine (m6A) is the most abundant mRNA modification, regulating gene expression.
- m6A modifications are dynamic and mediated by writers, erasers, and readers.
- The role of m6A in viral infections, particularly during Epstein-Barr virus (EBV) de novo infection, remains largely unexplored.
Purpose of the Study:
- To investigate the viral and cellular m6A epitranscriptomes during the pre-latent phase of de novo EBV infection.
- To elucidate the impact of m6A modifications on EBV-host interactions.
Main Methods:
- Methylated RNA immunoprecipitation sequencing (MeRIP-seq) and MeRIP-RT-qPCR were employed to identify m6A-modified transcripts.
- RNA immunoprecipitation (RIP) assays confirmed the binding of EBNA2 and m6A readers.
- Quantitative reverse-transcription polymerase chain reaction (RT-qPCR) and Western blot analyses assessed gene expression changes.
Main Results:
- EBV infection led to significant m6A modifications in viral transcripts EBNA2 and BHRF1.
- Knockdown of METTL3, an m6A writer, reduced EBNA2 expression.
- EBV infection altered m6A distribution in host transcripts, with new modifications in 3' UTRs and lost modifications in coding regions.
Conclusions:
- m6A modification plays a critical role in the early stages of de novo EBV infection.
- EBV infection dynamically remodels the host epitranscriptome, influencing virus-host interactions.
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