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Chromatin Modification in iPS Cells01:32

Chromatin Modification in iPS Cells

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Chromatin modification alters gene expression; therefore, scientists can add histone-modifying enzymes, histone variants, and chromatin remodeling complexes to somatic cells to aid reprogramming into pluripotent stem (iPS) cells.
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Nucleosomes are the basic units of chromatin compaction. Each nucleosome consists of the DNA bound tightly around a histone core, which makes the DNA inaccessible to DNA binding proteins such as DNA polymerase and RNA polymerase. Hence, the fundamental problem is to ensure access to DNA when appropriate, despite the compact and protective chromatin structure.
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The histone proteins in the nucleosomes are post-translationally modified (PTM) to increase or decrease access to DNA. The commonly observed PTMs are methylation, acetylation, phosphorylation, and ubiquitination of lysine amino acids in the histone H3 tail region. These histone modifications have specific meaning for the cell. Hence, they are called "histone code". The protein complex involved in histone modification is termed as "reader-writer" complex.
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Epigenetics is the study of inherited changes in a cell's phenotype without changing the DNA sequences. It provides a form of memory for the differential gene expression pattern to maintain cell lineage, position-effect variegation, dosage compensation, and maintenance of chromatin structures such as telomeres and centromeres. For example, the structure and location of the centromere on chromosomes are epigenetically inherited. Its functionality is not dictated or ensured by the underlying...
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The extent of chromatin compaction can be studied by staining chromatin using specific DNA binding dyes. Under the microscope, the dense-compacted regions that take up more dye are called heterochromatin. Heterochromatin is further classified into two forms – constitutive heterochromatin and facultative heterochromatin.
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The extent of chromatin compaction can be studied by staining chromatin using specific DNA binding dyes. Under the microscope, the dense-compacted regions take up more dye, appearing darker, while the less-compact areas take up less dye and appear lighter. Based on the compaction level, chromatins are classified into two primary forms – euchromatin and heterochromatin.
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Chromatin Remodeler CHD8 in Autism and Brain Development.

Anke Hoffmann1, Dietmar Spengler1

  • 1Department of Translational Research in Psychiatry, Max-Planck Institute of Psychiatry, 80804 Munich, Germany.

Journal of Clinical Medicine
|January 22, 2021
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Summary

Chromodomain Helicase DNA-binding 8 (CHD8) mutations are linked to autism spectrum disorders (ASDs). Animal models reveal how CHD8 alterations impact brain function, offering insights into neurodevelopmental disorders.

Keywords:
autismchromatin regulationneurodevelopmentneurodevelopmental disordersneuronal connectivityneuronal plasticityneurotransmissionpluripotent stem cells

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Area of Science:

  • Neuroscience
  • Genetics
  • Developmental Biology

Background:

  • Chromodomain Helicase DNA-binding 8 (CHD8) is a high-confidence risk factor for autism spectrum disorders (ASDs).
  • CHD8 mutations cause a neurodevelopmental syndrome with autism, macrocephaly, and facial dysmorphism.
  • While CHD8's structural and transcriptional roles are known, its impact on brain function and disease is less understood.

Purpose of the Study:

  • To review recent advances in understanding CHD8's role in neurodevelopment using animal models.
  • To highlight key findings on neurodevelopment, neuronal connectivity, neurotransmission, plasticity, and habituation in these models.
  • To discuss improvements for future animal studies, including sex-specific effects and novel model systems.

Main Methods:

  • Review of existing literature on transgenic animal models with CHD8 mutations.
  • Analysis of phenotypes related to neurodevelopment, neuronal function, and behavior.
  • Discussion of technical improvements and emerging model systems like cerebral organoids.

Main Results:

  • Transgenic animal models provide critical insights into how CHD8 mutations affect brain function.
  • Key findings cover neurodevelopment, neuronal connectivity, neurotransmission, synaptic plasticity, and habituation.
  • Sex-specific effects of CHD8 mutations are crucial for understanding neuronal and systems-level function.

Conclusions:

  • Animal models are essential for studying the link between CHD8 mutations and altered brain function in ASDs.
  • Future research should address technical limitations and sex-specific effects in animal models.
  • Pluripotent stem cell-derived cerebral organoids may help bridge the gap between model organisms and human neurodevelopment.