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Gap Junctions01:37

Gap Junctions

56.0K
Multicellular organisms employ a variety of ways for cells to communicate with each other. Gap junctions are specialized proteins that form pores between neighboring cells in animals, connecting the cytoplasm between the two, and allowing for the exchange of molecules and ions. They are found in a wide range of invertebrate and vertebrate species, mediate numerous functions including cell differentiation and development, and are associated with numerous human diseases, including cardiac and...
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Gap Junctions01:27

Gap Junctions

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The cytoplasm of adjacent animal cells can exchange small molecules, ions, and secondary messengers via the communication channels which form the gap junctions. These junctions comprise a few hundred to thousands of molecular channels, each made of two halves, called the connexon hemichannel. A connexon is a hexamer of six transmembrane connexin proteins, which assemble radially, thus forming a pore or channel in the center. One connexon hemichannel docks with a corresponding connexon on the...
8.9K
Metal-Semiconductor Junctions01:24

Metal-Semiconductor Junctions

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The contact of metal and semiconductor can lead to the formation of a junction with either Schottky or Ohmic behavior.
Schottky Barriers
Schottky barriers arise when a metal with a work function (Φm) contacts a semiconductor with a different work function (Φs). Initially, electrons transfer until the Fermi levels of the metal and semiconductor align at equilibrium. For instance, if Φm > Φs, the semiconductor Fermi level is higher than the metal's before contact. The...
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Overview of Cell-Matrix Interactions01:24

Overview of Cell-Matrix Interactions

8.4K
The extracellular matrix or ECM holds cells together to form a tissue and allows the cells within the tissue to communicate. ECM comprises proteins such as fibronectin, collagen, laminin, etc. The most abundant protein in this space is collagen. Collagen fibers are interwoven with carbohydrate-containing protein molecules called proteoglycans. ECM allows cell migration and provides a structural scaffold at cell adhesion that anchors the cell when the extracellular matrix proteins interact with...
8.4K
Interfacial Electrochemical Methods: Overview01:06

Interfacial Electrochemical Methods: Overview

606
Interfacial electrochemical methods focus on the phenomena occurring at the boundary between an electrode and a solution, as opposed to bulk methods that concentrate on the solution's overall properties. These interfacial methods are classified as either static or dynamic based on the presence of a nonzero current in the electrochemical cell and the consistency of analyte concentrations. Static methods, such as potentiometry, measure the cell's potential without any significant current...
606
Protein Dynamics in Living Cells01:19

Protein Dynamics in Living Cells

2.4K
Different fluorescence-based techniques are used to study the protein dynamics in living cells. These techniques include FRAP, FRET, and PET.
Fluorescent recovery after photobleaching (FRAP) is a fluorescent-protein-based detection technique used to quantify protein movement rates within the cell. This method exposes a small portion of the cell to an intense laser beam. The laser beam causes permanent photobleaching of the fluorophore-tagged proteins in the exposed region. As the bleached...
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Related Experiment Video

Updated: Nov 20, 2025

Single-Molecule Förster Resonance Energy Transfer Methods for Real-Time Investigation of the Holliday Junction Resolution by GEN1
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Single-Molecule Förster Resonance Energy Transfer Methods for Real-Time Investigation of the Holliday Junction Resolution by GEN1

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Green's function methods for single molecule junctions.

Guy Cohen1, Michael Galperin2

  • 1The Raymond and Beverley Sackler Center for Computational Molecular and Materials Science, Tel Aviv University, Tel Aviv 69978, Israel.

The Journal of Chemical Physics
|January 22, 2021
PubMed
Summary
This summary is machine-generated.

This review covers Green's function methods for open quantum systems, particularly single molecule junctions. It highlights approaches for weak interactions and coupling, and discusses advanced methods for complex systems.

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Area of Science:

  • Quantum Mechanics
  • Condensed Matter Physics
  • Molecular Electronics

Background:

  • Experimental advances in molecular electronics have spurred theoretical interest.
  • Understanding open quantum systems out of equilibrium is crucial.
  • Green's function methods are powerful tools for theoretical analysis.

Purpose of the Study:

  • To provide a pedagogical review of theoretical Green's function methods.
  • To focus on applications to single molecule junctions.
  • To discuss various theoretical approaches for analyzing these systems.

Main Methods:

  • Review of standard nonequilibrium Green's function (NEGF) method.
  • Discussion of many-body flavors like pseudoparticle and Hubbard NEGF.
  • Introduction to the superperturbation dual fermion approach for intermediate regimes.
  • Overview of numerically exact methods based on Green's functions.

Main Results:

  • Identified two characteristic energy scales: many-body interactions and molecule-contact coupling.
  • Demonstrated the utility of NEGF for weak interactions and coupling.
  • Showcased the superperturbation dual fermion approach for comparable energy scales.
  • Highlighted recent developments in numerically exact Green's function methods.

Conclusions:

  • Green's function methods offer versatile approaches for studying open quantum systems.
  • Specific methods are well-suited for different regimes of interaction and coupling.
  • Advanced numerical techniques are extending the applicability of Green's functions to complex systems.