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Updated: Nov 20, 2025

Sample Preparation to Bioinformatics Analysis of DNA Methylation: Association Strategy for Obesity and Related Trait Studies
Published on: May 6, 2022
Male obesity impacts DNA methylation reprogramming in sperm
Sanaz Keyhan1, Emily Burke2, Rose Schrott3,4
1Division of Reproductive Endocrinology and Infertility, Department of Obstetrics and Gynecology, Duke University Medical Center, Durham, NC, 27713, USA.
Male obesity alters sperm DNA methylation, potentially impacting future generations. These epigenetic changes in sperm may affect development if passed to offspring.
Area of Science:
- Reproductive Biology
- Epigenetics
- Men's Health
Background:
- Male obesity significantly impacts health and mortality, with limited understanding of its effects on sperm and potential transgenerational consequences.
- DNA methylation is crucial for gene regulation, undergoing dynamic changes during sperm development, making it vulnerable to environmental factors like obesity.
- An obesogenic environment may disrupt the epigenetic reprogramming essential for healthy gametogenesis.
Purpose of the Study:
- To investigate the association between male overweight/obesity and DNA methylation profiles in human sperm.
- To explore potential epigenetic alterations in sperm that could be transmitted to offspring.
Main Methods:
- Exploratory analysis comparing DNA methylation profiles of sperm from overweight/obese men (n=20) and normal BMI controls (n=47).
- Utilized Infinium HumanMethylation450 BeadChips to identify CpG sites associated with Body Mass Index (BMI).
- Employed bisulfite sequencing of cloned alleles for individual sperm analysis to determine methylation patterns.
Main Results:
- Identified 3264 CpG sites in human sperm significantly associated with BMI (p < 0.05).
- Overrepresented CpG sites were linked to genes involved in transcriptional regulation, nervous system development, and stem cell pluripotency.
- Methylation differences were observed in a subset of sperm, not uniformly distributed, suggesting targeted epigenetic disruption.
Conclusions:
- Male obesity is linked to altered sperm DNA methylation, potentially affecting epigenetic reprogramming fidelity in specific sperm populations.
- These alterations may indicate an influence on spermatogonia and warrant further investigation for heritability.
- If heritable, these sperm DNA methylation changes could potentially interfere with normal fetal development.
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