BRAIN LESION DETECTION USING A ROBUST VARIATIONAL AUTOENCODER AND TRANSFER LEARNING
Haleh Akrami1, Anand A Joshi1, Jian Li1
1Signal and Image Processing Institute, University of Southern California, Los Angeles.
Proceedings. IEEE International Symposium on Biomedical Imaging
|January 27, 2021
Summary
This study introduces a robust variational autoencoder and transfer learning to improve automated brain lesion detection from MRI scans. The method enhances accuracy, even with outlier data and varying imaging parameters.
Area of Science:
- Medical Imaging
- Machine Learning
- Neurology
Background:
- Automated brain lesion detection from multi-spectral MRI aids clinicians but supervised methods require extensive manual data and lack generalizability.
- Unsupervised models like autoencoders eliminate the need for manual delineations but struggle with pre-trained model adaptation to new datasets with different parameters, demographics, or preprocessing.
- Clinical datasets often contain anomalies, posing challenges for unsupervised learning due to outlier impact on model performance.
Purpose of the Study:
- To address the challenges of unsupervised brain lesion detection, particularly concerning dataset variability and outliers.
- To develop a robust and adaptable unsupervised learning framework for accurate brain lesion detection.
Main Methods:
- A robust variational autoencoder (VAE) model utilizing β-divergence was employed to handle datasets with outliers.
- A transfer-learning approach was implemented to enable model adaptation across datasets with differing characteristics.
- The combined approach was tested on MRI datasets for brain lesion detection.
Main Results:
- The proposed method demonstrated improved accuracy in brain lesion detection.
- The robust VAE effectively handled data containing anomalies and outliers.
- Transfer learning facilitated successful adaptation of models to new datasets.
Conclusions:
- Adapting robust statistical models and transfer learning within a VAE framework significantly enhances unsupervised brain lesion detection accuracy.
- The developed method offers a more reliable solution for automated lesion detection in diverse clinical settings.
- This approach overcomes key limitations of existing unsupervised methods, paving the way for broader clinical application.

