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Complete Genome Sequences of 12 Quinolone-Resistant Escherichia coli Strains Containing qnrS1 Based on Hybrid
Håkon Kaspersen1, Thomas H A Haverkamp2, Hanna Karin Ilag2
1Department of Animal Health and Food Safety, Norwegian Veterinary Institute, Oslo, Norway.
Microbiology Resource Announcements
|January 29, 2021
Abstract:
In total, 12 quinolone-resistant Escherichia coli (QREC) strains containing qnrS1 were submitted to long-read sequencing using a FLO-MIN106 flow cell on a MinION device. The long reads were assembled with short reads (Illumina) and analyzed using the MOB-suite pipeline. Six of these QREC genome sequences were closed after hybrid assembly.
