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The Spike D614G mutation increases SARS-CoV-2 infection of multiple human cell types
Zharko Daniloski1,2, Tristan X Jordan3, Juliana K Ilmain4
1New York Genome Center, New York, United States.
Abstract:
A novel variant of the SARS-CoV-2 virus carrying a point mutation in the Spike protein (D614G) has recently emerged and rapidly surpassed others in prevalence. This mutation is in linkage disequilibrium with an ORF1b protein variant (P314L), making it difficult to discern the functional significance of the Spike D614G mutation from population genetics alone. Here, we perform site-directed mutagenesis on wild-type human-codon-optimized Spike to introduce the D614G variant. Using multiple human cell lines, including human lung epithelial cells, we found that the lentiviral particles pseudotyped with Spike D614G are more effective at transducing cells than ones pseudotyped with wild-type Spike. The increased transduction with Spike D614G ranged from 1.3- to 2.4-fold in Caco-2 and Calu-3 cells expressing endogenous ACE2 and from 1.5- to 7.7-fold in A549ACE2 and Huh7.5ACE2 overexpressing ACE2. Furthermore, trans-complementation of SARS-CoV-2 virus with Spike D614G showed an increased infectivity in human cells. Although there is minimal difference in ACE2 receptor binding between the D614 and G614 Spike variants, the G614 variant is more resistant to proteolytic cleavage, suggesting a possible mechanism for the increased transduction.
Insights
The SARS-CoV-2 D614G Spike protein variant enhances viral transduction and infectivity in human cells. This variant shows increased resistance to proteolytic cleavage, contributing to its prevalence.
Area of Science:
- Virology
- Molecular Biology
- Genetics
Background:
- A novel SARS-CoV-2 variant with a D614G mutation in the Spike protein has rapidly become dominant.
- Linkage disequilibrium with an ORF1b protein variant (P314L) complicates understanding the D614G mutation's functional impact.
Purpose of the Study:
- To investigate the functional significance of the SARS-CoV-2 Spike D614G mutation.
- To determine the effect of the D614G variant on viral transduction and infectivity.
Main Methods:
- Site-directed mutagenesis was used to introduce the D614G variant into the Spike protein.
- Lentiviral particles pseudotyped with wild-type and D614G Spike variants were used to transduce various human cell lines.
- SARS-CoV-2 virus was complemented with the D614G Spike variant for infectivity assays.
- ACE2 receptor binding and proteolytic cleavage resistance were assessed.
Main Results:
- Pseudotyped lentiviral particles with Spike D614G showed significantly increased transduction efficiency across multiple human cell lines (1.3- to 7.7-fold increase).
- SARS-CoV-2 virus complemented with Spike D614G exhibited enhanced infectivity in human cells.
- The D614G Spike variant demonstrated increased resistance to proteolytic cleavage compared to the wild-type D614 variant.
- Minimal difference in ACE2 receptor binding was observed between D614 and G614 Spike variants.
Conclusions:
- The Spike D614G mutation enhances SARS-CoV-2 infectivity and cell transduction.
- Increased resistance to proteolytic cleavage is a potential mechanism driving the enhanced infectivity of the D614G variant.
- These findings provide functional insights into the rapid global spread of the D614G SARS-CoV-2 variant.
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