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Sinbase 2.0: An Updated Database to Study Multi-Omics in Sesamum indicum.
Liwen Wang1,2, Jingyin Yu1,3, Yanxin Zhang1
1Key Laboratory of Biology and Genetic Improvement of Oil Crops, Oil Crops Research Institute of the Chinese Academy of Agricultural Sciences, Ministry of Agriculture, No.2 Xudong Second Road, Wuhan 430062, China.
Plants (Basel, Switzerland)
|February 12, 2021
Summary
Sinbase 2.0 is a new sesame multi-omics database integrating updated genome sequences and diverse biological data. This resource aids researchers in understanding sesame biology, genetic improvement, and comparative genomics.
Area of Science:
- Plant genomics
- Bioinformatics
- Crop science
Background:
- Sesame (Sesamum indicum) is an ancient oil crop with global cultivation.
- Previous genomic resources (Sinbase 1.0) were limited.
- A comprehensive, integrated database for recent sesame multi-omics data was lacking.
Purpose of the Study:
- To develop Sinbase 2.0, an interactive and comprehensive multi-omics database for sesame.
- To integrate updated sesame genome data with diverse biological datasets.
- To provide user-friendly tools and accessible data for the research community.
Main Methods:
- Development of an integrated database (Sinbase 2.0).
- Inclusion of updated sesame genome information (13 chromosomes, linkage maps).
- Integration of multi-omics data: comparative genomics, genomic variation, transcriptome, proteome, functional markers, genes, and QTLs.
Main Results:
- Sinbase 2.0 provides comprehensive data on sesame's updated genome.
- The database includes extensive multi-omics datasets (genomics, transcriptomics, proteomics, etc.).
- Novel computational tools and downloadable datasets are available.
Conclusions:
- Sinbase 2.0 is a valuable resource for sesame research.
- The database facilitates advancements in sesame biology, genetic improvement, and evolutionary studies.
- Regular updates will ensure Sinbase 2.0 remains a vital platform for the sesame research community.
