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Updated: Nov 17, 2025

Candidate Gene Testing in Clinical Cohort Studies with Multiplexed Genotyping and Mass Spectrometry
Published on: June 21, 2018
Validation of a top-down DNA profile analysis for database searching using a fully continuous probabilistic
Duncan Taylor1, Jo-Anne Bright2, Lenara Scandrett3
1Forensic Science SA, GPO Box 2790, Adelaide, SA 5001, Australia; College of Science and Engineering, Flinders University, GPO Box 2100, Adelaide, SA 5001, Australia.
Abstract:
Slooten described a method of targeting major contributors in mixed DNA profiles and comparing them to individuals on a DNA database. The method worked by taking incrementally more peak information from the profile (based on the peak contribution), and using a semi-continuous model, calculating likelihood ratios for the comparison to database individuals. We describe the performance of this "top down approach" to profile interpretation within probabilistic genotyping software employing a fully continuous model. We interpret both complex constructed profiles where ground truth is known and casework profiles from non-suspect crimes. The interpretation of constructed four- and five- person mixtures demonstrated good discrimination power between contributors and non-contributors to the mixtures. Not all known contributors linked, and this is expected, particularly for minor contributors of DNA to the profile, or when the DNA from contributors was in relatively equal contributions. This finding was also reported by Slooten for the semi-continuous application of the approach. The maximum observed LR was shown to not exceed the LR obtained after a standard interpretation approach outside of that expected due to Monte Carlo variation. The interpretation of 91 complex profiles from no-suspect casework demonstrated that approximately 75% of profiles returned a link to someone on a database of known individuals. With a yearly average of 110 no-suspect cases that fall into this too-complex category at Forensic Science SA, the top down analysis, if applied to all such profiles, would represent an increase of 83 links per year of investigative information that could be provided to investigators.
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