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Patient journey through cases of depression from claims database using machine learning algorithms
Yoshitake Kitanishi1, Masakazu Fujiwara1, Bruce Binkowitz2
1Data Science Office, Shionogi & Co. Ltd., Osaka, Japan.
Plos One
|February 16, 2021
Summary
Machine learning and Topological Data Analysis (TDA) Mapper were used to visualize patient journeys for depression diagnoses. This approach offers a visual classification of diseases associated with depression, aiding precision medicine.
Area of Science:
- Health Informatics
- Computational Biology
- Data Science
Background:
- Real-world data from health insurance and hospital claims are increasingly available in Japan.
- Machine learning methods are being explored for analyzing this data, but methodologies for visualizing patient journeys remain under development.
- Existing machine learning approaches estimate data correlation structures for disease classification and prognosis prediction.
Purpose of the Study:
- To apply association analysis to real-world data to define patient journeys for depression diagnoses.
- To address the limitations of association analysis in simultaneously interpreting multiple outcome measures.
- To utilize Topological Data Analysis (TDA) Mapper for sequential interpretation of multiple indices and visual classification of depression-associated diseases.
Main Methods:
- Applied association analysis to real-world health insurance and hospital claims data to model patient journeys for depression.
- Employed Topological Data Analysis (TDA) Mapper to interpret multiple indices and visualize disease associations sequentially.
- Focused on a cohort with depression diagnoses.
Main Results:
- Developed a visual and continuous classification of diseases commonly associated with depression using TDA Mapper.
- Demonstrated the utility of TDA Mapper in overcoming the interpretability challenges of traditional association analysis for complex health data.
- Identified patterns in patient journeys related to depression diagnoses.
Conclusions:
- The TDA Mapper approach provides a novel method for visualizing and understanding complex disease associations within patient journeys.
- This visual classification can significantly contribute to precision medicine research by identifying comorbidities and informing personalized treatment strategies.
- The findings support the use of advanced data analysis techniques for leveraging real-world health data to improve patient care and pharmaceutical research.
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