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Genome-Wide Analysis of DNA Methylation in Gastrointestinal Cancer
Published on: September 18, 2020
Aberrant Hypermethylation-Mediated Suppression of PYCARD Is Extremely Frequent in Prostate Cancer with Gleason
Toshiya Miyauchi1,2, Masahiro Takahashi1,3, Koji Mitsuzuka3
1Division of Pathology, Tohoku University School of Medicine, Sendai, Miyagi 980-8575, Japan.
Abstract:
Epigenetic gene silencing by aberrant DNA methylation leads to loss of key cellular pathways in tumorigenesis. In order to analyze the effects of DNA methylation on prostate cancer, we established LNCaP-derived human prostate cancer cells that can pharmacologically induce global reactivation of hypermethylated genes by the methyl-CpG targeted transcriptional activation (MeTA) method. The MeTA suppressed the growth of LNCaP-derived cells and induced apoptosis. Microarray analysis indicated that PYCARD (PYD and CARD domain containing) encoding an apoptosis-inducing factor was upregulated by 65-fold or more after treatment with MeTA. We analyzed DNA methylation statuses using 50 microdissected primary prostate cancer tissues and found an extremely high frequency of tumor-specific promoter hypermethylation of PYCARD (90%, 45/50). Moreover, DNA methylation status was significantly associated with Gleason score (P = 0.0063); the frequency of tumor-specific hypermethylation was 96% (44/46) in tumors with Gleason score ≥ 7, whereas that in tumors with Gleason score 6 was 25% (1/4). Immunohistochemical analyses using these 50 cases indicated that only 8% (4/50) of cancerous tissues expressed PYCARD, whereas 80% (40/50) of corresponding normal prostate epithelial and/or basal cells expressed PYCARD. In addition, there was no relationship between PYCARD immunostaining and the Gleason score in cancerous tissue and surrounding normal tissue. Inducible expression of PYCARD inhibited cell proliferation by induction of apoptosis. These results suggest that aberrant methylation of PYCARD is a distinctive feature of prostate cancers with Gleason score ≥ 7 and may play an important role in escaping from apoptosis in prostatic tumorigenesis.
Insights
Aberrant DNA methylation silences the PYCARD gene in prostate cancer, particularly in aggressive tumors (Gleason score ≥ 7). Reactivating PYCARD via the MeTA method inhibits cancer growth and induces apoptosis.
Area of Science:
- Oncology
- Epigenetics
- Molecular Biology
Background:
- Aberrant DNA methylation is a key mechanism in cancer development, leading to the silencing of critical genes.
- Understanding DNA methylation's role in prostate cancer is crucial for developing targeted therapies.
Purpose of the Study:
- To investigate the impact of DNA methylation on prostate cancer progression.
- To analyze the function of the PYCARD gene in prostate tumorigenesis and its association with methylation status and Gleason score.
Main Methods:
- Established LNCaP-derived prostate cancer cells for pharmacological induction of gene reactivation using the methyl-CpG targeted transcriptional activation (MeTA) method.
- Analyzed PYCARD gene expression and DNA methylation status in 50 microdissected primary prostate cancer tissues.
- Utilized microarray analysis and immunohistochemistry to assess gene expression and protein levels.
Main Results:
- MeTA treatment suppressed LNCaP cell growth and induced apoptosis, upregulating PYCARD expression by over 65-fold.
- Found a 90% frequency of tumor-specific PYCARD promoter hypermethylation in prostate cancers.
- PYCARD hypermethylation was significantly associated with higher Gleason scores (≥ 7), occurring in 96% of these tumors, compared to 25% in Gleason score 6 tumors.
Conclusions:
- Aberrant methylation of the PYCARD gene is a frequent event in prostate cancer, especially in tumors with Gleason score ≥ 7.
- Loss of PYCARD expression due to hypermethylation may contribute to apoptosis evasion in prostate tumorigenesis.
- Reactivation of PYCARD holds potential for therapeutic strategies against prostate cancer.
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