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Propagation source identification of infectious diseases with graph convolutional networks
Liang Li1, Jianye Zhou1, Yuewen Jiang2
1Department of Automation, Tsinghua University, Beijing, PR China.
Journal of Biomedical Informatics
|February 28, 2021
Summary
This study introduces a novel graph convolutional network for identifying infection sources in networks. The Source Identification Graph Convolutional Network (SIGN) framework improves accuracy and reduces error distance, especially in large-scale outbreaks.
Area of Science:
- Network science
- Computational epidemiology
- Machine learning
Background:
- Accurate source identification is crucial for controlling infectious disease spread.
- Existing methods often struggle to balance accuracy and error distance.
- Network topology and infection rates significantly impact source identification challenges.
Purpose of the Study:
- To develop an effective method for identifying infection sources in networks.
- To improve both the accuracy and error distance of source identification.
- To leverage graph convolutional networks for epidemiological network analysis.
Main Methods:
- Proposed a label propagation framework incorporating both infected and uninfected nodes.
- Developed a novel Source Identification Graph Convolutional Network (SIGN) framework.
- Introduced a modified loss function, neighborhood loss, to minimize average error distance.
Main Results:
- SIGN demonstrated effective source identification across diverse network topologies and infection sizes.
- The proposed method achieved strong performance, particularly under large infection sizes.
- SIGN outperformed four mainstream approaches in extensive experimental evaluations.
Conclusions:
- The SIGN framework offers a robust solution for network source identification.
- The approach effectively addresses challenges posed by varying infection rates and network structures.
- This work advances the application of graph convolutional networks in disease propagation analysis.
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