Mrc1-Dependent Chromatin Compaction Represses DNA Double-Stranded Break Repair by Homologous Recombination Upon

Poyuan Xing1, Yang Dong1, Jingyu Zhao1

  • 1Hubei Key Laboratory of Cell Homeostasis and the Institute for Advanced Studies, College of Life Sciences, Wuhan University, Wuhan, China.

Insights

The Mrc1 protein prevents DNA double-strand break repair during replication stress by compacting chromatin, hindering repair protein access. Removing Mrc1 partially restores repair, highlighting its role in genome stability.

Area of Science:

  • Molecular Biology
  • Genetics
  • Cell Biology

Background:

  • DNA replication and repair coordination is vital for genome stability.
  • The Mrc1-mediated S phase checkpoint inhibits DNA double-strand break (DSB) repair via homologous recombination (HR).
  • The precise mechanism by which the replication checkpoint suppresses HR is not fully understood.

Purpose of the Study:

  • To elucidate how the replication checkpoint inhibits homologous recombination (HR) under replication stress.
  • To investigate the role of Mrc1 in suppressing DNA double-strand break (DSB) repair pathways.
  • To understand the mechanistic link between Mrc1, chromatin structure, and HR suppression.

Main Methods:

  • Investigated the impact of replication stress on DNA resection pathways (Sgs1/Dna2 and Exo1).
  • Assessed the loading of replication protein A (RPA) and Rad51 under replication stress.
  • Utilized deletion mutants of *MRC1* and other factors (Csm3, Tof1, Ctf4) to study HR inhibition.
  • Analyzed chromatin compaction using microscopy and assessed the accessibility of HR proteins.

Main Results:

  • Replication stress suppresses Sgs1/Dna2 and Exo1 resection pathways in an Mrc1-dependent manner.
  • Mrc1-dependent suppression of resection impairs RPA and Rad51 loading, inhibiting DSB repair by HR.
  • Deletion of *MRC1* partially restores resection, RPA/Rad51 loading, and HR.
  • Replication stress induces Mrc1-dependent global chromatin compaction, limiting HR protein access.

Conclusions:

  • Mrc1 plays a critical role in inhibiting DSB end resection and HR under replication stress.
  • Mrc1-dependent chromatin compaction is a key mechanism suppressing HR during replication stress.
  • This study reveals how Mrc1 coordinates DNA replication and recombination through chromatin structure modulation for genome stability.

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