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Updated: Nov 14, 2025

Visualization of DNA Repair Proteins Interaction by Immunofluorescence
Published on: June 26, 2020
Mrc1-Dependent Chromatin Compaction Represses DNA Double-Stranded Break Repair by Homologous Recombination Upon
Poyuan Xing1, Yang Dong1, Jingyu Zhao1
1Hubei Key Laboratory of Cell Homeostasis and the Institute for Advanced Studies, College of Life Sciences, Wuhan University, Wuhan, China.
Abstract:
The coordination of DNA replication and repair is critical for the maintenance of genome stability. It has been shown that the Mrc1-mediated S phase checkpoint inhibits DNA double-stranded break (DSB) repair through homologous recombination (HR). How the replication checkpoint inhibits HR remains only partially understood. Here we show that replication stress induces the suppression of both Sgs1/Dna2- and Exo1-mediated resection pathways in an Mrc1-dependent manner. As a result, the loading of the single-stranded DNA binding factor replication protein A (RPA) and Rad51 and DSB repair by HR were severely impaired under replication stress. Notably, the deletion of MRC1 partially restored the recruitment of resection enzymes, DSB end resection, and the loading of RPA and Rad51. The role of Mrc1 in inhibiting DSB end resection is independent of Csm3, Tof1, or Ctf4. Mechanistically, we reveal that replication stress induces global chromatin compaction in a manner partially dependent on Mrc1, and this chromatin compaction limits the access of chromatin remodeling factors and HR proteins, leading to the suppression of HR. Our study reveals a critical role of the Mrc1-dependent chromatin structure change in coordinating DNA replication and recombination under replication stress.
Insights
The Mrc1 protein prevents DNA double-strand break repair during replication stress by compacting chromatin, hindering repair protein access. Removing Mrc1 partially restores repair, highlighting its role in genome stability.
Area of Science:
- Molecular Biology
- Genetics
- Cell Biology
Background:
- DNA replication and repair coordination is vital for genome stability.
- The Mrc1-mediated S phase checkpoint inhibits DNA double-strand break (DSB) repair via homologous recombination (HR).
- The precise mechanism by which the replication checkpoint suppresses HR is not fully understood.
Purpose of the Study:
- To elucidate how the replication checkpoint inhibits homologous recombination (HR) under replication stress.
- To investigate the role of Mrc1 in suppressing DNA double-strand break (DSB) repair pathways.
- To understand the mechanistic link between Mrc1, chromatin structure, and HR suppression.
Main Methods:
- Investigated the impact of replication stress on DNA resection pathways (Sgs1/Dna2 and Exo1).
- Assessed the loading of replication protein A (RPA) and Rad51 under replication stress.
- Utilized deletion mutants of *MRC1* and other factors (Csm3, Tof1, Ctf4) to study HR inhibition.
- Analyzed chromatin compaction using microscopy and assessed the accessibility of HR proteins.
Main Results:
- Replication stress suppresses Sgs1/Dna2 and Exo1 resection pathways in an Mrc1-dependent manner.
- Mrc1-dependent suppression of resection impairs RPA and Rad51 loading, inhibiting DSB repair by HR.
- Deletion of *MRC1* partially restores resection, RPA/Rad51 loading, and HR.
- Replication stress induces Mrc1-dependent global chromatin compaction, limiting HR protein access.
Conclusions:
- Mrc1 plays a critical role in inhibiting DSB end resection and HR under replication stress.
- Mrc1-dependent chromatin compaction is a key mechanism suppressing HR during replication stress.
- This study reveals how Mrc1 coordinates DNA replication and recombination through chromatin structure modulation for genome stability.
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