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Published on: September 9, 2016
Different Disease Endotypes in Phenotypically Similar Vasculitides Affecting Small-to-Medium Sized Blood Vessels
Erin E Gill1, Maren L Smith1, Kristen M Gibson2,3
1Department of Microbiology and Immunology, University of British Columbia, Vancouver, BC, Canada.
Insights
New research reveals distinct biological endotypes in small-to-medium sized vessel vasculitis, offering a pathway to biologically-based classification and targeted treatments for this rare inflammatory condition.
Area of Science:
- Immunology
- Genomics
- Rheumatology
Background:
- Chronic primary vasculitis involves complex blood vessel inflammation.
- Current classification relies on vessel size and clinical presentation.
- Improved classification, based on underlying biology, is needed for small-to-medium sized vessel vasculitis to guide treatment.
Purpose of the Study:
- To define disease subtypes of small-to-medium sized vessel vasculitis based on underlying biology.
- To explore gene expression patterns in pediatric and adult patients.
- To identify novel classification criteria for vasculitis subtypes.
Main Methods:
- RNA sequencing (RNA-Seq) was performed on blood samples from pediatric (n=41) and adult (n=11) patients.
- Unsupervised hierarchical clustering of gene expression data was combined with clinical metadata.
- Disease subtypes (endotypes) were identified using differential gene expression analysis.
Main Results:
- Two primary endotypes were identified in both children and adults, differing in thousands of gene expressions at diagnosis.
- These endotypes were also observed during disease flares and could be distinguished by as few as 20 genes.
- Endotypes were associated with distinct immune processes: neutrophil degranulation and T cell receptor signaling.
Conclusions:
- Small-to-medium sized vessel vasculitis subtypes may be driven by different innate versus adaptive immune mechanisms.
- Gene expression analysis reveals distinct biological endotypes within phenotypically similar vasculitis.
- This mechanistic classification offers an alternative to current subtyping methods for vasculitis.
Abstract:
Objectives: Chronic primary vasculitis describes a group of complex and rare diseases that are characterized by blood vessel inflammation. Classification of vasculitis subtypes is based predominantly on the size of the involved vessels and clinical phenotype. There is a recognized need to improve classification, especially for small-to-medium sized vessel vasculitides, that, ideally, is based on the underlying biology with a view to informing treatment. Methods: We performed RNA-Seq on blood samples from children (n = 41) and from adults (n = 11) with small-to-medium sized vessel vasculitis, and used unsupervised hierarchical clustering of gene expression patterns in combination with clinical metadata to define disease subtypes. Results: Differential gene expression at the time of diagnosis separated patients into two primary endotypes that differed in the expression of ~3,800 genes in children, and ~1,600 genes in adults. These endotypes were also present during disease flares, and both adult and pediatric endotypes could be discriminated based on the expression of just 20 differentially expressed genes. Endotypes were associated with distinct biological processes, namely neutrophil degranulation and T cell receptor signaling. Conclusions: Phenotypically similar subsets of small-to-medium sized vessel vasculitis may have different mechanistic drivers involving innate vs. adaptive immune processes. Discovery of these differentiating immune features provides a mechanistic-based alternative for subclassification of vasculitis.
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